PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46916.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 507aa    MW: 55671.6 Da    PI: 7.3606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46916.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26113169259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++s+ ++++++ +  g+Hnh+
  KHN46916.1 113 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSN-NGHITDSICIGQHNHP 169
                 7***************************************9.***************8 PP
2WRKY100.78.5e-32288346159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver++ d k+v++tYeg+H+he
  KHN46916.1 288 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASYDSKTVITTYEGQHDHE 346
                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-23106171IPR003657WRKY domain
PROSITE profilePS5081119.187107171IPR003657WRKY domain
SuperFamilySSF1182902.35E-22108171IPR003657WRKY domain
SMARTSM007749.0E-29112170IPR003657WRKY domain
PfamPF031062.7E-21113169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-33276348IPR003657WRKY domain
SuperFamilySSF1182906.02E-28280348IPR003657WRKY domain
PROSITE profilePS5081134.348283348IPR003657WRKY domain
SMARTSM007742.0E-35288347IPR003657WRKY domain
PfamPF031067.7E-25289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVSTDKSADQ NIPSDELQQR VSPDSDTTLS QGHDTKNDLS KPEEATSILS IVVKNEGKDS  60
DATACALESD QEGSTCSLPL GKPLQSPDTL SHEFPRLQSS QECPSIIREK VSKDGYNWRK  120
YGQKHVKGNE FIRSYYKCTH PNCQAKKQLQ QSNNGHITDS ICIGQHNHPR PQLNSTVSVE  180
CVLPVVEQAP HKPSLANVED KASVEHGCMP QQIKPLQSFP PAKVSPVNEL KAAHLQLTKA  240
KNQVHDNKEP ESKRLKKDNS NADVARVDMS TRESRVVVVQ TSSEVDLVND GYRWRKYGQK  300
LVKGNTNPRS YYRCSNPGCP VKKHVERASY DSKTVITTYE GQHDHEIPPG RTVTQNAATN  360
TRTTATNGKA GTKSEGNTDD TGERSGLGLT SRLTEQQTGK STTKSKAGDM VEFRVIRLSN  420
EGPEIKLSEQ QQQKDNSATK DDSVSNDVIC HSSSGVLCRS NEQLKGEVKP ISEGSKDCLK  480
VVAVHDTPST ESEFNKQSAA DAEPVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-35277350376WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46916.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200408.10.0WRKY transcription factor 1-like
SwissprotQ9SI378e-76WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0B2SJM80.0A0A0B2SJM8_GLYSO; WRKY transcription factor 1
STRINGGLYMA14G01010.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-76zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]