PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 777aa MW: 89403.1 Da PI: 6.2447 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 100 | 2.4e-31 | 70 | 161 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ ++ eHnHel+p KHN46858.1 70 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 161 9***************************************998888545677889***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.8E-30 | 70 | 161 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.6E-32 | 282 | 374 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.5E-12 | 550 | 596 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.029 | 562 | 598 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-9 | 573 | 600 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MDNEVEVLEF DIGLGGGEGE YDDDDGGGID EEELGVATGG GEIYLPEGDL LDLEPCEGME 60 FESEEAAKAF YNSYARRVGF STRVSSSRRS RRDGAIIQRQ FVCAKEGFRN LNEKRTKDRE 120 IKRPRTITRV GCKASLSVKM QDSGKWIVSG FVREHNHELV PPDQVHCLRS HRQISGAAKT 180 LIDTLQAAGM GPRRIMSALI KEYGGISKVG FTEVDCRNYM RNNRLRSLEG DIQLVLDYLR 240 QMHAENPNFF YAVQGDEDQS ITNVFWADPK ARMNYTFFGD TVTFDTTYRS NRYRLPFAFF 300 TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRP PVSITTDHDS VIRSAIIQVF 360 PETRHRFCKW HIFKKCQEKL SHIFLQYPNF EAEFHKCVNL TESTEEFESC WSTLVDKYDL 420 RDHEWLQAIY SSCRQWVPVY LRDTFFAEMS ITQRSDSMNS YFDGYINAST NLSQFFKLYE 480 KALESRNEKE VRADYDTMNT LPVLRTPSPM EKQASELYTR KIFMRFQEEL VGTLTLMASK 540 ADDDGEVITY HVAKYGEDHK GYCVKFNVLE MKATCSCQMF EFSGLLCRHV LAVFRVTNVL 600 TLPSHYILKR WTRNAKSNVI LEEHACDVYT YYLESHIVRY NTLRHEAFKF VDEGARSAET 660 YDVAMDALQE AAKRVSQGMQ NEGKIPINNG KVRSHVLNDE SHANYTSGCQ EESLSQHMSK 720 DDLDKNIRKL MNELECANRK CEIYRSNLLS VLKAVEDHKL ELSVKVENIK ISMKDGI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46858.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545054.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_028199862.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0B2SPV3 | 0.0 | A0A0B2SPV3_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA14G00240.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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