PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46843.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 261aa    MW: 28781.6 Da    PI: 6.5048
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46843.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-194897255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+ +tae Aa+a++aa++k++g
  KHN46843.1 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTLDTAEAAAAAYDAAALKFKG 97
                7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3147106IPR001471AP2/ERF domain
PfamPF008477.1E-134897IPR001471AP2/ERF domain
CDDcd000184.48E-2148107No hitNo description
SMARTSM003803.6E-3548111IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2048106IPR016177DNA-binding domain
PROSITE profilePS5103224.59248105IPR001471AP2/ERF domain
PRINTSPR003678.6E-144960IPR001471AP2/ERF domain
PRINTSPR003678.6E-1487107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MHPINTGDDS TLSSPIPQYG QISNSCLIET QDPSLQPLNQ GGNGRKRHYR GVRQRPWGKW  60
AAEIRDPKKA ARVWLGTLDT AEAAAAAYDA AALKFKGSKA KLNFPEHVLL PPPPISSSSP  120
PCNNNNNHHS YYYGSSALAP LAPPPQHVYD QTPPPPQQQP LLSSSAQEEG FPNLMQYAQL  180
LWSRDDDDLQ RIASGLHQHH HHNEAFYDSS SSTLFSSTST TYSMTVSDQQ QNIGDDTSTP  240
MGAEYNYGGC FFRGSDFHDK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2547108163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931401e-158BT093140.1 Soybean clone JCVI-FLGm-22C2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206759.10.0ethylene-responsive transcription factor ERF113-like
TrEMBLA0A445GEE20.0A0A445GEE2_GLYSO; Ethylene-responsive transcription factor ERF114 isoform A
STRINGGLYMA16G05190.21e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-30ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]