PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46789.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 281aa    MW: 31474.7 Da    PI: 6.6509
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46789.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.6e-17209243135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  KHN46789.1 209 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 243
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-14203257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147203239IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15204267No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13207241IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.37E-12208255No hitNo description
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PfamPF003205.4E-15209243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNMDMCQNVS VSGECQQVQV FAPSCSSSLD DLFSAQNTEV DVELEWLSEF VEDCFSSPPS  60
CVLVPVGVKT TSTKSTSTSI NPSLKRPQQQ NEPPLQNFAV PGKARSKRKR LSAPRTNKDP  120
LSIWSHHLNP QNEALCSDPP LLKQAYWLAD SELIMPKPKD KEEQQEEVVI MAKEDEEKVI  180
INVSKEISFG DSELDEGSNG QQQPMPRRCT HCLAQRTPQW RAGPLGPKTL CNACGVRYKS  240
GRLLPEYRPA KSPTFVSYLH SNSHKKVMEM RMSVYSISSE Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935010.0BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548758.10.0GATA transcription factor 9
RefseqXP_028205780.10.0GATA transcription factor 9-like
TrEMBLA0A445GED70.0A0A445GED7_GLYSO; GATA transcription factor 9
TrEMBLK7MF590.0K7MF59_SOYBN; Uncharacterized protein
STRINGGLYMA16G04670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-43GATA transcription factor 9
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]