PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN46677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 75aa MW: 8786.66 Da PI: 10.4832 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.8e-05 | 44 | 62 | 1 | 19 |
CHHHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsa 19 +r +h+e E+rRR++iN++ KHN46677.1 44 QRSKHSETEQRRRSKINER 62 799**************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-4 | 43 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MARSAKGHQD EFDDDDEEEL LTANNTSSKV KVDEPSTGKR VNPQRSKHSE TEQRRRSKIN 60 ERQALKKRRR KNSFC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 70 | RRRSKINERQALKKRRRK |
2 | 64 | 71 | LKKRRRKN |
3 | 65 | 70 | KKRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN46677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097088 | 2e-99 | BT097088.1 Soybean clone JCVI-FLGm-21H13 unknown mRNA. | |||
GenBank | KT031127 | 2e-99 | KT031127.1 Glycine max clone HN_CCL_217 bHLH transcription factor (Glyma18g51080.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240051.1 | 5e-36 | transcription factor BIM2-like | ||||
Refseq | XP_028211977.1 | 5e-36 | transcription factor BIM2-like | ||||
TrEMBL | A0A0B2SR00 | 7e-47 | A0A0B2SR00_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA18G51080.1 | 2e-35 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38860.1 | 2e-06 | BES1-interacting Myc-like protein 3 |
Publications ? help Back to Top | |||
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