PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46586.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 315aa    MW: 34174.1 Da    PI: 8.9652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46586.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-131642127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++ ++C +++rtG C yGdrC+F+H++
  KHN46586.1 16 PGVPNCVYYMRTGVCGYGDRCRFNHPR 42
                5789*********************96 PP
2zf-CCCH41.32.6e-136387327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                +++C+++++tGtCk+G++CkF+H++
  KHN46586.1 63 EPPCQYYLKTGTCKFGASCKFHHPK 87
                79*********************96 PP
3zf-CCCH382.8e-12109133327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+++++tG+Ck+G +CkF+H++
  KHN46586.1 109 EKECSYYLKTGQCKFGISCKFHHPQ 133
                 689********************97 PP
4zf-CCCH35.71.5e-11264290127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++++rtG Ck+G  C+++H++
  KHN46586.1 264 PGEPECQYYLRTGDCKFGLACRYHHPR 290
                 5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-61542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1081543IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-91742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-71944IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-62142IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-66087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9956088IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-66388IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-106387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-66586IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549106134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4112132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624263291IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5263290IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9265290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MWHLTLGGVE SYPERPGVPN CVYYMRTGVC GYGDRCRFNH PRDRAAVAAA VRATGDYPER  60
VGEPPCQYYL KTGTCKFGAS CKFHHPKNGG GYLSQAPLNI YGYPLRLGEK ECSYYLKTGQ  120
CKFGISCKFH HPQPAGTSLP TSAPQFYQQV QSPTVPLPEQ YGGASTSLRV ARPPVLPGSY  180
VQGAYGPVLL SPGVVQFPGW SHYSAPVSPV LSPGTQPAVG ATSLYGVTQL SLPTSAFARP  240
YTPLSSTTGP SGSSLKDRFF PERPGEPECQ YYLRTGDCKF GLACRYHHPR DHIVAPLLSP  300
VGLPLRPVCM VIPLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518958.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_028207339.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-152C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0B2SIN50.0A0A0B2SIN5_GLYSO; Zinc finger CCCH domain-containing protein 32
STRINGGLYMA02G17250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-144C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]