PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46482.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 323aa    MW: 36041.7 Da    PI: 6.8371
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46482.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-2572116145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  KHN46482.1  72 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 116
                 79****************************************986 PP
2QLQ63.94e-22945137
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  KHN46482.1  9 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 45
                89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-12945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3951045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-161044IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76272116IPR014977WRC domain
PfamPF088792.9E-2173115IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGFSSNGRSP FTVSQWQELE HQALIFKYMV AGLPVPPDLV LPIQKSFDST LSHAFFHHPT  60
LSYCSFYGKK VDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS RKPVESQTMT  120
HSSSTVTSLT VTGGGDSNGT VNFQNLPTNA FGNLQGTDSG TDRTNYHLDS IPYAIPSKEY  180
RCLQGLKSEG GEHCFFSEAS GSNKVLQMES QLENTWPSMS TRVASFSTSK SSTDSLLHSD  240
YPQHSFLSGE YASGEHVKEE GQPLRPFSNE WPKSRESWSG LEDDISNQTA FSTTQLSISI  300
PMSSDFSATS SQSPHGENEI QFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352640.0AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540042.10.0growth-regulating factor 4
RefseqXP_028192972.10.0growth-regulating factor 4-like
TrEMBLA0A445HJL60.0A0A445HJL6_GLYSO; Growth-regulating factor 5 isoform A
TrEMBLI1LP390.0I1LP39_SOYBN; Uncharacterized protein
STRINGGLYMA12G01730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-49growth-regulating factor 5