PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN46464.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 347aa MW: 38928.6 Da PI: 6.0798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN46464.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.7	7.3e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lvd+++++G g+W++ +++ g++R++k+c++rw +yl KHN46464.1 14 KGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.8	5e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l++++++ lG++ W++Ia +++ gRt++++k++w+++l KHN46464.1 67 RGKFSEEEEQLIINLHAVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.347	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.25E-13	16	61	No hit	No description
PROSITE profile	PS51294	27.685	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-17	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.46E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGRTPCSDEN GLKKGPWTPE EDRILVDYIQ KHGHGSWRAL PKHAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQLIIN LHAVLGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLLQMG 120 LDPVTHRPRS DHLNLLSNLQ QLLAATNIVS NLTNTWDTNN ALRLQSDATQ LAKLQLLQNI 180 LHVLGDTTPT SNLDLLNPFG PSSSSLPDGF LNEVLGLNQS KLQNLYNGYS AQNQPNLQSF 240 EPPHQQQVLP TGNQHMDGGS IDSSCMKPEK GDEQLDVPYS SSTPFNSLPN LVSASPECST 300 HVLMQMENKV MPNECSDPSS STSTNFEMWG DFMYEEVSDA YWKDLIE

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGRTPCSDEN GLKKGPWTPE EDRILVDYIQ KHGHGSWRAL PKHAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQLIIN LHAVLGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLLQMG  120
LDPVTHRPRS DHLNLLSNLQ QLLAATNIVS NLTNTWDTNN ALRLQSDATQ LAKLQLLQNI  180
LHVLGDTTPT SNLDLLNPFG PSSSSLPDGF LNEVLGLNQS KLQNLYNGYS AQNQPNLQSF  240
EPPHQQQVLP TGNQHMDGGS IDSSCMKPEK GDEQLDVPYS SSTPFNSLPN LVSASPECST  300
HVLMQMENKV MPNECSDPSS STSTNFEMWG DFMYEEVSDA YWKDLIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN46464.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108651	0.0	AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347977.1	0.0	transcription factor MYB101
Refseq	XP_028192889.1	0.0	transcription factor MYB53-like
Swissprot	Q9S9Z2	7e-91	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0B2SPH3	0.0	A0A0B2SPH3_GLYSO; Transcription factor MYB39
TrEMBL	A0A445HJP1	0.0	A0A445HJP1_GLYSO; Transcription factor MYB93
TrEMBL	I1LP67	0.0	I1LP67_SOYBN; Uncharacterized protein
STRING	GLYMA12G01960.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-100	myb domain protein 9

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]