PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46251.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 348aa    MW: 38673.9 Da    PI: 4.8445
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46251.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15186222135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  KHN46251.1 186 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 222
                 *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.8495691IPR010399Tify domain
SMARTSM009798.3E-75691IPR010399Tify domain
PfamPF062005.3E-116090IPR010399Tify domain
SMARTSM004016.8E-13180233IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.8180237IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.51E-12181234No hitNo description
Gene3DG3DSA:3.30.50.105.5E-15184227IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.48E-15185228No hitNo description
PfamPF003202.1E-13186222IPR000679Zinc finger, GATA-type
PROSITE patternPS003440186213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDNSTLNNPG DNAEDPPPPP APMQVFDSFQ PFHYANGSDE GEEAVPAPVA NASSAMRARA  60
SELTISFEGE VYVFPAVTPE KVQAVLLLLG AQEMPNSAPT SDFLLQQNYQ DIREINDPSR  120
SSKLSRRFAS LVRFREKRKE RCFEKKIRMH RKNGQFASLK EDYKSPAENW DSSNGTPCPD  180
STERRCQHCG ISEKSTPAMR RGPAGPRSLC NACGLMWANK GTLRDLSKAG RIAFEQNELD  240
TSADIKPSTT EAKHSYAKQG KEGSPEETKP VQMDSRRSPE KTNEQFIIGT AESVTNNLSV  300
RLENHALILH EQDTLEDLAD ASGTEFEIPA GFDDQVDIDD ANMRTYWL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46251.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063581e-45AP006358.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT36C13, TM0100b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532598.10.0GATA transcription factor 24
RefseqXP_028244801.10.0GATA transcription factor 24-like
SwissprotQ8GXL73e-55GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0B2SHU60.0A0A0B2SHU6_GLYSO; GATA transcription factor 24
STRINGGLYMA08G07170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.15e-46ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]