PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46066.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 484aa    MW: 53384.9 Da    PI: 7.8849
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46066.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.5e-36472012134
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssas. 83 
                  g+kdrhsk+ T++g+Rd RvRls+++a++f+dLqd+LG+d++sk++eWL++ a  +i el+++                +               ++ 
  KHN46066.1  47 SGGKDRHSKVMTSKGLRDGRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDSISELPSLnnfpdtpksddhekraN---------------TDv 130
                 689*************************************************************87766555444433331...............222 PP

         TCP  84 ..................nsssgkaaksaakskksqksaasalnlak.esrakararare.rtrekmrikn 134
                                   n+s++ + +++ +s+ s++s+ s l+l++ + r kar+rare  t+ek + kn
  KHN46066.1 131 aagavdgenyenengnnnNQSQNMSLSKSGCSSTSETSKGSGLSLSRsDIRVKARERARErTTKEKEKEKN 201
                 222233333322222221334446666677999999999999****99999*********55566665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3948198IPR005333Transcription factor, TCP
PROSITE profilePS5136929.06949107IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384178196IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEEEDEIQAQ KVRRRRGSDG ESTNRFHSSW HHHHHHSSRI IRVSRASGGK DRHSKVMTSK  60
GLRDGRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKSA SDSISELPSL NNFPDTPKSD  120
DHEKRANTDV AAGAVDGENY ENENGNNNNQ SQNMSLSKSG CSSTSETSKG SGLSLSRSDI  180
RVKARERARE RTTKEKEKEK NESHHHHSNV VVPHHRHHHH HNPVSQTASF TELLTGGIPK  240
GCDDEEPNNM MMFNKAAAAA SSGRQQWCSS SSAAAAAPMD YFLGPSSSRT TTTPPHNHHH  300
HHHQYSSSGG FSLAQIQLGH SLPEAMNHNV SAFNNNVSGE NQNHSSSDPH LQQQQHFSFI  360
PDHLMSAVVT SSSHHSHHHH HQPSGNDYNL NSTMSSGLAG YNRGTLQSNS PSLLPHLQRF  420
SPLDGSTVPF FIGAAPSAAV AAPAMENNTT TTNNHHHHQF SSGFDGSRLQ LYYGHSDQKG  480
KAKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2254108155Putative transcription factor PCF6
5zkt_B1e-2254108155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028232610.10.0transcription factor TCP2-like
RefseqXP_028232611.10.0transcription factor TCP2-like
RefseqXP_028232612.10.0transcription factor TCP2-like
RefseqXP_028232613.10.0transcription factor TCP2-like
RefseqXP_028232614.10.0transcription factor TCP2-like
RefseqXP_028232615.10.0transcription factor TCP2-like
TrEMBLA0A0B2SH540.0A0A0B2SH54_GLYSO; Transcription factor TCP2
STRINGGLYMA05G27367.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]