PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 292aa    MW: 32065.5 Da    PI: 7.71
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45896.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.74.3e-66982453154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100
                 s +++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrer+qqla ++ +++ +   ++ +kr++       +++s++  s  ++ + l
  KHN45896.1  98 SMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGvGDNIPKRHHP-----DTTTSTQLASAPQPVTGL 191
                 6789**************************************************9998777654424444444433.....333333333444556789 PP

      DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 e  ++P+evs++a frcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+
  KHN45896.1 192 ELGQFPAEVSTSASFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPES 245
                 999*************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.8E-63100244IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.0E-27102144IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26195243IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAGFFSLGGT QNKEEEEVEK GDKNNLLLLR NEEIYNNKGG FEIWPQSSSS YHLSNYFAFG  60
VGPSRRNRSE DVSLCVSEDE STRFGLSVMR TGGSSSSSMS MNCQDCGNQA KKDCAHLRCR  120
TCCKSRGFQC QTHVKSTWVP AAKRRERHQQ LAELQLQQQF RGVGDNIPKR HHPDTTTSTQ  180
LASAPQPVTG LELGQFPAEV STSASFRCVR VSAVDASDEQ YAYQTSVNIG GHVFKGFLYD  240
QGPESSYTGK NTPPPPPPPA TTSGNSPFDP SLYPAPLNAF MAGTQFFQPP RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-67AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227510.10.0protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ51e-78SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A445KVI40.0A0A445KVI4_GLYSO; Protein SHI RELATED SEQUENCE 5
STRINGGLYMA04G03000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-76SHI-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]