PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45888.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 245aa    MW: 26848.2 Da    PI: 5.0999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45888.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183988255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  KHN45888.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88
                69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.03E-223898No hitNo description
Gene3DG3DSA:3.30.730.102.2E-303997IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-213996IPR016177DNA-binding domain
SMARTSM003807.0E-3639102IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313996IPR001471AP2/ERF domain
PfamPF008471.3E-133988IPR001471AP2/ERF domain
PRINTSPR003671.1E-94051IPR001471AP2/ERF domain
PRINTSPR003671.1E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLKSGIGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELSI KSQSQCPPPS PPPPSSVTNN  120
TQMENLQQIQ NNYIDMATCS NFNNINNPEV SMASQQVGVG PIYTSDSIVS LPLDTNPKPV  180
ENEVEFRPSW ATMNEGLPVF DDSIWAEAAM SLDFPHIAAE TAIYASGNNL ADVGVWDSLQ  240
TPWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-194096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-82AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523563.10.0dehydration-responsive element-binding protein 2D
RefseqXP_028226981.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A445KVA30.0A0A445KVA3_GLYSO; Dehydration-responsive element-binding protein 2D
TrEMBLK7KHT10.0K7KHT1_SOYBN; Uncharacterized protein
STRINGGLYMA04G03070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-42ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]