PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45636.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 544aa    MW: 59510.1 Da    PI: 6.6495
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45636.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR279.1e-0967104442
         TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++C+ ++++  ++YCeCfa+g +C+  C+C +C+N+ e+
  KHN45636.1  67 QSCQLTNQEEERLYCECFASGIYCDG-CNCVNCFNNVEN 104
                 5677777777899*************.********9875 PP
2TCR512.8e-16149188140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  KHN45636.1 149 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 188
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-464104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.37865189IPR005172CRC domain
PfamPF036381.9E-568101IPR005172CRC domain
SMARTSM011148.4E-20149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12152187IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MVQAWKIEAH ENHNITKLTT EGRRGGSQRV WRNEVGTQAL KLKQRSTKLE SLQTEEMVLF  60
EALDPFQSCQ LTNQEEERLY CECFASGIYC DGCNCVNCFN NVENEAARRE AVEATLERNP  120
NAFRPKIASS PHGTRDSREE AGEVLILGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK  180
CMDCKNFEGS EERQALFHGD QNNNMAYIQQ AANAAITGAI GSSGYSSPPV SKKRKGQELF  240
FWPTTKDPSI SKLGQQVNHV RGPAPSSSLS PVSGARVGTA TLGPSKFMYR SLLADIIQPQ  300
HLKELCSVLV LVSGQAAKTL TDQKILMEKQ AEDQTETSLA SSSQEQLPSQ KEGRVEKTVA  360
DDCSSANQTD KISPDNSSSD GADVPKGRPM SPGTLALMCD EQDTMFMTAA SPIAPMAHAC  420
NTSSQFPYGQ EMTEVYAEQE RIVLTKFRDF LNRVITMGEI NGKLIFSSFK TKCSSLARNE  480
LESQKDPIIN GIGNTSSQIV LQHGTTSNGV TKPAVSPLAT TSTSMIPGNI AENGETKVKI  540
EKEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-28621987132Protein lin-54 homolog
5fd3_B7e-28621987132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45636.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181955.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-174TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0B2SFV60.0A0A0B2SFV6_GLYSO; Protein lin-54 like
STRINGGLYMA09G32420.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-155Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]