PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN45529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34917.4 Da PI: 9.9557 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rWT++E +l+ +a + + ++ +W ++a+ ++ g+t +++ ++ KHN45529.1 28 RWTPQENKLFENALAVFDKDtpdRWLKVAALIP-GKTVGDVIKQYRE 73 9********************************.******9999986 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.7e-14 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky KHN45529.1 136 PWTKEEHRQFLTGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 180 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.949 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 5.8E-8 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.33E-11 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-6 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 6.2E-6 | 28 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 127 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.257 | 129 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.75E-17 | 130 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 132 | 184 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-13 | 133 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 136 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-11 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MNRGIEVLSP ASYLQSSNWL FQESSGTRWT PQENKLFENA LAVFDKDTPD RWLKVAALIP 60 GKTVGDVIKQ YRELEADVSV IESGFIPVPG YTATDSFTLE WVNNQGFGGL RQFYGVTGKR 120 GASNRPSEQE RKKGVPWTKE EHRQFLTGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY 180 FIRQLSGGKD KKRSSIHDIT MVNLPEAKSL SSESNRPSSL DHSVKDVNPP RQNQKLSTTM 240 VIKQEHDWKL PCETVPMHFN STNRNMFMTQ LCGISSNGSK PLQEQYFLSG CQFGPYGTII 300 QMQSMQNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-16 | 25 | 94 | 7 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN45529.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031184 | 0.0 | KT031184.1 Glycine max clone HN_CCL_88 MYB/HD-like transcription factor (Glyma03g14440.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028236234.1 | 0.0 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 1e-109 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A445M1Q6 | 0.0 | A0A445M1Q6_GLYSO; Transcription factor DIVARICATA isoform A | ||||
STRING | GLYMA01G27720.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-117 | MYB family protein |
Publications ? help Back to Top | |||
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