PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN45460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 67aa MW: 8044.27 Da PI: 11.2869 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.9 | 5.3e-06 | 5 | 61 | 1 | 53 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRa 53 r+kRttf++eq + L ++ e+ +p +e++ e+ + + g+t r+ vW N R KHN45460.1 5 RKKRTTFSSEQKNKLIRFAESvGWKPRKEKKDEIESFCsemGITRRKFVVWLSNNRH 61 89*************99888677788877777776665555*************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 2 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.782 | 2 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.79E-15 | 2 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-20 | 4 | 60 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MRSKRKKRTT FSSEQKNKLI RFAESVGWKP RKEKKDEIES FCSEMGITRR KFVVWLSNNR 60 HQAINDA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN45460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006593245.1 | 2e-42 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_028193348.1 | 2e-42 | zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A0B2SK82 | 4e-41 | A0A0B2SK82_GLYSO; ZF-HD homeobox protein | ||||
TrEMBL | A0A445HRG9 | 5e-41 | A0A445HRG9_GLYSO; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | K7LVE1 | 5e-41 | K7LVE1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G29001.1 | 9e-42 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 8e-15 | homeobox protein 33 |
Publications ? help Back to Top | |||
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