PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN45359.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 583aa MW: 65854.4 Da PI: 5.6774

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN45359.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.6e-14	422	469	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+++P +++K +iLe +++YIk+L+ KHN45359.1 422 TNHVMAERRRREKLNERFLILRSMVPFM-----MRMDKESILEDTIHYIKQLR 469 78***********************7.....5***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.2E-52	9	187	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	1.83E-16	418	480	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.69E-15	418	473	No hit	No description
PROSITE profile	PS50888	16.31	419	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-15	422	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-11	422	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-14	425	474	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MATPPNSRLH TMLRASVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS 60 TEEASLQRSE QLRELYESLS AEETINTQTR RPCAALSPED LTESEWFYLL CVSFSFHLGI 120 GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKTVVCIPV LEGVVELGTT DKIEEDLNFI 180 QHIKSFFIDQ QPPPPTAKPA LSEHSTSNLT SSYPLVIVPV TAAATANNVL IQNDMNIVDK 240 GEAIILNNNN NNTEAELLAD PNSNSFIPSE LMELDHQLEE FGVGSPGDGS NHLDSFPKEE 300 SMALCAAGLE LLQLQRPPAP AHPPTENLAQ GDTDTHYSQT VSSILKKNSS RWWPDSPSVN 360 HPTDSFQSAF NKWKSDTDNH HHYFHETVAD GTSQGLLKYI LFNVPYLHAN RLKGTGASSY 420 ETNHVMAERR RREKLNERFL ILRSMVPFMM RMDKESILED TIHYIKQLRE KIESLEARER 480 LRGKRRVREV EVSIIESEAL LEVECVHRER LLLDVMTMLR ELGVEVMMVQ SWVKDDGVFV 540 AEMRAKVKEN GNGKKASVVE VKNALNQIIP HHEPYTLCSN DHF

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MATPPNSRLH TMLRASVQSV QWTYSLFWQL CPQQGILTWG DGYYNGAIKT RKTVQAMEVS  60
TEEASLQRSE QLRELYESLS AEETINTQTR RPCAALSPED LTESEWFYLL CVSFSFHLGI  120
GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKTVVCIPV LEGVVELGTT DKIEEDLNFI  180
QHIKSFFIDQ QPPPPTAKPA LSEHSTSNLT SSYPLVIVPV TAAATANNVL IQNDMNIVDK  240
GEAIILNNNN NNTEAELLAD PNSNSFIPSE LMELDHQLEE FGVGSPGDGS NHLDSFPKEE  300
SMALCAAGLE LLQLQRPPAP AHPPTENLAQ GDTDTHYSQT VSSILKKNSS RWWPDSPSVN  360
HPTDSFQSAF NKWKSDTDNH HHYFHETVAD GTSQGLLKYI LFNVPYLHAN RLKGTGASSY  420
ETNHVMAERR RREKLNERFL ILRSMVPFMM RMDKESILED TIHYIKQLRE KIESLEARER  480
LRGKRRVREV EVSIIESEAL LEVECVHRER LLLDVMTMLR ELGVEVMMVQ SWVKDDGVFV  540
AEMRAKVKEN GNGKKASVVE VKNALNQIIP HHEPYTLCSN DHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-19	9	187	9	192	Transcription factor MYC3
4rqw_B	1e-19	9	187	9	192	Transcription factor MYC3
4rs9_A	1e-19	9	187	9	192	Transcription factor MYC3
4yz6_A	1e-19	9	187	9	192	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	432	ERRRRE
2	428	433	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN45359.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003553458.1	0.0	basic helix-loop-helix protein A
Refseq	XP_028217715.1	0.0	basic helix-loop-helix protein A-like
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A0B2SLT1	0.0	A0A0B2SLT1_GLYSO; Transcription factor TT8
STRING	GLYMA19G33770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3637	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	7e-90	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]