PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN45122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 613aa MW: 67842.5 Da PI: 8.1135 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.4e-16 | 250 | 309 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g KHN45122.1 250 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 309 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 47.3 | 5e-15 | 352 | 403 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g KHN45122.1 352 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403 57****************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.2E-13 | 250 | 309 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.53E-21 | 250 | 316 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-16 | 250 | 319 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-15 | 251 | 317 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.782 | 251 | 317 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 251 | 323 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-10 | 352 | 403 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 352 | 413 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.15E-26 | 352 | 413 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-18 | 353 | 411 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.032 | 353 | 411 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 353 | 417 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 393 | 413 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MSPSHMSNSG MCYSVGENGN FHSPLTVMPL KSDGSLGILE ALNRSQTQVM VPTSSPKLED 60 FLGGATMGTH EYGNHERGLS LDSIYYNSQN AEAQPNRNLL SHPFRQQGHV NVETHPYYSV 120 FACRGLYQAP SEEEATKETH VSVMPQMTGG GLQNWVAPTR EYSTHQQILE QQMNCGIWNE 180 RSGVSVGTVG CGELQSLSLS MSPGSQSSCV TAPSGTDSVA VDAKKRGHAK LGQKQPVHRK 240 SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY 300 DLAALKYWGP STHINFSIEN YQVQLEEMKN MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH 360 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGANAVTNF DISRYDVERI 420 MASSNLLAGE LARRNKDNDP RNEAIDYNKS VVTSVNNGET VQVQARNNNE NDSEWKMVLF 480 NHPLQQQANG SDHKIMNCGN SRNSAFSMAL QDLIGVDSVG SEQHNMLDDS SKIGTHFSNP 540 SSLVTSLSSS REASPEKMGP SLLFPKPPPM ETKIVNPIGT SVTSWLPSPT VQMRPSPAIS 600 LSHLPVFAAW TDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN45122.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006581282.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Refseq | XP_028235004.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-159 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0B2SLG6 | 0.0 | A0A0B2SLG6_GLYSO; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | GLYMA06G05170.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-148 | AP2 family protein |