PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN45097.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 340aa    MW: 38257.1 Da    PI: 5.1359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN45097.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.9e-154494255
                HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+e E+rRR++iN++ f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  KHN45097.1 44 RSKHSETEQRRRSKINERqFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 94
                899*************9758*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-2142117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5764293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1743122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-124494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-154498No hitNo description
SMARTSM003534.7E-104899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MARSAKGHQD EFDEDDEEEL LTGNISSKVK VDEPSTGKRV NPHRSKHSET EQRRRSKINE  60
RQFQVLRDLI PQNDQKRDKA SFLLEVIEYI QFLQEKIQIY EQTYEGWNQE PTKLTPWRNH  120
HGPAENTTDP SQASQNGSVD EKNNNVSPLL PKNVQNLIES DFSMTTIQKD HTPGSTTEAV  180
PLPMQMRLDM FDPIVSSGMA TQHLQEPVSN VNMPSHTQPQ LWLNKQSKGN YIVPHNDTMK  240
EQEELVIESG SDSISSAYSQ GILDSLTQAL HSSGVDMSQT NVSVQIDVGR RANSGLIPSA  300
YTSKGHENQF VSNPAIARSG VDYCNIDSEQ SSKRLRQEAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN45097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0981320.0BT098132.1 Soybean clone JCVI-FLGm-12G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531887.10.0transcription factor BIM3
RefseqXP_028245079.10.0transcription factor BIM3-like
TrEMBLA0A0B2SLD80.0A0A0B2SLD8_GLYSO; Transcription factor BIM2
STRINGGLYMA08G28010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-59BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]