PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 367aa    MW: 40322.6 Da    PI: 6.0649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44989.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12218264455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  KHN44989.1 218 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 264
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.8E-20188IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-14217268No hitNo description
SuperFamilySSF474596.15E-18217284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17218284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9218264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.05E-4298365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFYLSSMCYI FGFDSPCGPG SSFKSGKLIW ASDAAGCLNQ LESRSFMGKL AGLQTVVFVP  60
LKSGVVELGS LEMVPEEHGV VEMVRTAFGE SSPGQAKVFP KIFGHELSLG DTKSQSITIS  120
FSPKVEDDPG FTSDSYEVQA LGVNHAYGNS SNGTLGVSNE GKMFPQLNQM MAGNFNAQGS  180
GVPCLDLGNE DSSSIHADER KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV  240
VPNISKMDKA SLLGDAITFI TDLQMKIKVL EAEKNMIHNQ DQKLSLPDMD FQEREDETVV  300
TVRCPLDIHP VSNVVKTFKE HQIVAQDSSV STTDDKIIHT FSIRTEGGET AAIQLKEKLE  360
ASLSKNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-30212286276Transcription factor MYC2
5gnj_B1e-30212286276Transcription factor MYC2
5gnj_E1e-30212286276Transcription factor MYC2
5gnj_F1e-30212286276Transcription factor MYC2
5gnj_G1e-30212286276Transcription factor MYC2
5gnj_I1e-30212286276Transcription factor MYC2
5gnj_M1e-30212286276Transcription factor MYC2
5gnj_N1e-30212286276Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44989.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
GenBankAP0156800.0AP015680.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0636, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594010.10.0transcription factor bHLH3
RefseqXP_028197614.10.0transcription factor bHLH3-like
SwissprotA0A3Q7H2161e-136MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A445HEL70.0A0A445HEL7_GLYSO; Transcription factor bHLH3
TrEMBLK7LZ930.0K7LZ93_SOYBN; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-123bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]