PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40322.6 Da PI: 6.0649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.3e-12 | 218 | 264 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq KHN44989.1 218 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 264 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.8E-20 | 1 | 88 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.259 | 214 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.46E-14 | 217 | 268 | No hit | No description |
SuperFamily | SSF47459 | 6.15E-18 | 217 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 218 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 218 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-13 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.05E-4 | 298 | 365 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MFYLSSMCYI FGFDSPCGPG SSFKSGKLIW ASDAAGCLNQ LESRSFMGKL AGLQTVVFVP 60 LKSGVVELGS LEMVPEEHGV VEMVRTAFGE SSPGQAKVFP KIFGHELSLG DTKSQSITIS 120 FSPKVEDDPG FTSDSYEVQA LGVNHAYGNS SNGTLGVSNE GKMFPQLNQM MAGNFNAQGS 180 GVPCLDLGNE DSSSIHADER KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV 240 VPNISKMDKA SLLGDAITFI TDLQMKIKVL EAEKNMIHNQ DQKLSLPDMD FQEREDETVV 300 TVRCPLDIHP VSNVVKTFKE HQIVAQDSSV STTDDKIIHT FSIRTEGGET AAIQLKEKLE 360 ASLSKNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_B | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_E | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_F | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_G | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_I | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_M | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
5gnj_N | 1e-30 | 212 | 286 | 2 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 207 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44989.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015680 | 0.0 | AP015680.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0636, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594010.1 | 0.0 | transcription factor bHLH3 | ||||
Refseq | XP_028197614.1 | 0.0 | transcription factor bHLH3-like | ||||
Swissprot | A0A3Q7H216 | 1e-136 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A445HEL7 | 0.0 | A0A445HEL7_GLYSO; Transcription factor bHLH3 | ||||
TrEMBL | K7LZ93 | 0.0 | K7LZ93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G18131.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-123 | bHLH family protein |
Publications ? help Back to Top | |||
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