PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44965.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 155aa    MW: 17702.6 Da    PI: 6.681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44965.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-191667256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  KHN44965.1 16 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 67
                69*******.**********8542..4***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-211675No hitNo description
PROSITE profilePS5103225.5011674IPR001471AP2/ERF domain
SMARTSM003803.8E-361680IPR001471AP2/ERF domain
PfamPF008471.1E-131667IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-231675IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-321676IPR001471AP2/ERF domain
PRINTSPR003679.1E-121728IPR001471AP2/ERF domain
PRINTSPR003679.1E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGGRSSVSN GNCEVRYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA EQAARAYDAA  60
AFHFRGHRAI LNFPNEYQSH NPNSSLPMPL IVPPLSYSSS SSFTSNYSGD DNNHLVRPGE  120
IMQGGDLDDT FELEYLDNKL LEELLQMQDN RHFYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-28277375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44965.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0913950.0BT091395.1 Soybean clone JCVI-FLGm-7J20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197016.11e-114ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC58e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445HEZ61e-113A0A445HEZ6_GLYSO; Ethylene-responsive transcription factor ERF098
STRINGGLYMA13G18400.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]