PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN44833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 150aa MW: 16494.5 Da PI: 4.2128 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00075 | 15 | 44 | 19 | 54 |
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++++Lr++ +s ++Ka+i A++YI +L KHN44833.1 15 KLQQLRSVT------NSSAVNKASIIVDATRYIEEL 44 444444443......55579*************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-5 | 9 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-5 | 10 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.665 | 81 | 150 | IPR002912 | ACT domain |
CDD | cd04873 | 1.23E-4 | 90 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MDSRRRGKNA SMQRKLQQLR SVTNSSAVNK ASIIVDATRY IEELKQKVDG LNSELGTAES 60 SISQDELPMV TVETLERGFL INVFSERNCP GMLGAILDAF EELGLDVLDA RVSCEDTFQL 120 EAVGGESQEN ESIDAQVVKQ AVLQAIQNMD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN44833.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT091483 | 0.0 | BT091483.1 Soybean clone JCVI-FLGm-8G23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235904.1 | 1e-105 | uncharacterized protein LOC100500546 | ||||
Refseq | XP_028237522.1 | 1e-105 | uncharacterized protein LOC114416735 | ||||
TrEMBL | A0A0B2SJ22 | 1e-104 | A0A0B2SJ22_GLYSO; Transcription factor SCREAM2 | ||||
TrEMBL | A0A445M2J1 | 1e-103 | A0A445M2J1_GLYSO; Uncharacterized protein (Fragment) | ||||
TrEMBL | C6T227 | 1e-104 | C6T227_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G32130.1 | 1e-104 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF724 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12860.1 | 6e-11 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|