PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN44800.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 749aa    MW: 85889.1 Da    PI: 5.2484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN44800.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-0922621055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +rRRdriN+++  L+el+P++      K  Ka +L + +eY+ksLq
  KHN44800.1 22 QRRRDRINEKMKALQELIPPC-----SKSGKALMLDEPIEYLKSLQ 62
                8*******************9.....69999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.0871261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-121571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-71867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-82265No hitNo description
PfamPF000109.9E-72262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-122266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MSPSILCCFS HFQRVSYCIS LQRRRDRINE KMKALQELIP PCSKSGKALM LDEPIEYLKS  60
LQLQVDLQSY FADLSLFLVN DSKKMYILVD NRPWLLSDLG SRGVHIWQLM VTKSRLSPFA  120
YSKARRERKE GKEICPQSSS SKPKKFMRWF PLIEAVMLSR KKVLLPVKNL RNSLQLSSEL  180
HRTLYGFIVF EVAWAGVRGI NYYNELQTDT SLAIEAKLMK RWEFDSIAQA AGCMSSWFSG  240
TPSEQLLLKE HLDSASGDIF YDASEDFSGT VSVDDGDDNI CRILTVEDSL GTNVGVYTDD  300
TEETTDMLHA PPPSGPNKRR KLMNSFSAGV EVDSYSTAEI DNSLDYSQTS SCVSDDTVET  360
TQDDTLETTQ DDIVETTQDD TVEATQYSDV LLSFRFDDHD LPFKFREVIV SDLRLLTLLE  420
AGLPSWVIFL QSYPVLCNLY RPWMCPLARL LYFLISFVTV LIGFYDLYKN VPVLKATASR  480
LCGPLLDWIE TWEMVSRVKY LGTMLFLHNF QKAVRWFLAF THTMRSFFSI LVQPVVESLV  540
EIFGFLLPSL KFLFELAESI FSVIWLVVDT SFDIVGNVLE LLFSPLWFVL NVVWSIATCI  600
LYPLFWVLWE LLYAPVRLVL VIFSFVASIS SYICNTLGNT WQFVSSIFQF AASSEATVSV  660
SEVSMWQRTL WNDLFSQVIF RALKSILYGF AAFFTACNRH RLSIYNHVQE FIQGLYRTCQ  720
RSREDDSRDS GKTCLPLNLV RTLKLMSMM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN44800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220008.10.0uncharacterized protein LOC114401638
RefseqXP_028220009.10.0uncharacterized protein LOC114401638
TrEMBLA0A0B2SIG70.0A0A0B2SIG7_GLYSO; Transcription factor PIF1
STRINGGLYMA20G13240.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-16phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]