PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CAMTA | ||||||||
Protein Properties | Length: 944aa MW: 105650 Da PI: 5.2524 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168 | 1.4e-52 | 13 | 128 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e k+rwlk+ e + iL n+++ ++t++++++p gsl+L+nr+++r frkDG++w+kkkdgktv E+he+LKvg+ve+l+cyYah+een+tfqrr+yw KHN44450.1 13 QEaKRRWLKPVEALYILRNHDQCKFTHQPPHQPAGGSLFLFNRRIMRSFRKDGHNWRKKKDGKTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYW 111 56699********************************************************************************************** PP CG-1 101 lLeeelekivlvhylev 117 +Le e+++ivlvhy+e+ KHN44450.1 112 MLEPEYDHIVLVHYRET 128 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.254 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.7E-66 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.8E-46 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.7E-6 | 384 | 471 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 3.2E-6 | 385 | 456 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 6.38E-16 | 385 | 469 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 5.1E-15 | 578 | 673 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.743 | 579 | 671 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.71E-15 | 582 | 673 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 7.0E-8 | 596 | 673 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 9.07E-13 | 599 | 671 | No hit | No description |
SMART | SM00248 | 0.0038 | 612 | 641 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.06 | 612 | 644 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3000 | 651 | 680 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 7.638 | 730 | 757 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 944 aa Download sequence Send to blast |
MAGLEYSIDD LFQEAKRRWL KPVEALYILR NHDQCKFTHQ PPHQPAGGSL FLFNRRIMRS 60 FRKDGHNWRK KKDGKTVGEA HERLKVGNVE ILNCYYAHGE ENRTFQRRSY WMLEPEYDHI 120 VLVHYRETSE GKSNSEHVTQ LPSGSSPAFS QSHSSYTAHN PGTASMIGDS CEPNQNFSFP 180 GSLEVTFEAQ ALRQLEEQLS LNDDGFNEIA LDLVSGQDQR VVYKQDKSAA LSGPNDLGQP 240 CDGYNGRQDD SGTYYHDFLD DCPGGNEKTI YWTKVLESCK PLSVTKLPDQ HAYEAIGNEN 300 TLFSSGRGVI ANLENNQWLN SNSNNIENSV LLFPQDGGVK FPPYSLAETP GANSDYYETF 360 FDQFQNQGPL GVDSSLTVVQ KQKFTIRAVS PEYCYSTETT KVIIIGSFLC HDSDSTWACM 420 FGDVEVPAEI IQDGIICCEA PSNHLGKVNL CITSGNRVPC SEMREFEFRN KTTSCTRCNS 480 LETEGSKSPE DLLLLVRFAE MLLSSSTTKD DRIESGSHLS TEQKDDDDSW SHIIDTLLDS 540 TRTPSDAVKW LLEELLKDKL QLWLSNRRDE GTGCSLSKKE QGIIHMVSGL GFEWALNPIL 600 SCGVNINFRD INGWTALHWA ARFGREKMVA SLIASGASAG AVTDPSSQDP TGKTAASIAA 660 SHDHKGLAGY LSEVDLTSHL SSLTLEESEL SRESSELEAE LTVSSVSEEN LVASEDQVSL 720 KASLDAVRNA AQAAARIQAA FRAHSFRKRK ERDAAATVLD GYCIDAGSID NNISVLSAMS 780 KLSSQSWRDY KAALSIQKKY RNWKGRIEFL ALRQKIVKIQ LILWAVGILD KVVLRWRRKR 840 IGIQSVRQEM ESNEEESDDA DFLNVFRKEK LNAAIEKALK RVLSMVHSTG ARQQYRRLLS 900 LYRQAKIEHG STSDEAPLST SEENASNMED DDLCQFLDTF FWPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44450.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537532.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | K7LRY7 | 0.0 | K7LRY7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G36930.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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