PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43954.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 509aa    MW: 55917.8 Da    PI: 6.7516
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43954.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.41.1e-26115171259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vkg+ef rsYY+Ct+++C +kk++++s+ ++++++ +  g+Hnh+
  KHN43954.1 115 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCLAKKQLQQSN-NGHITDSICIGQHNHP 171
                 7***************************************9.***************8 PP
2WRKY103.71e-32289347159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d kvv++tYeg+H+he
  KHN43954.1 289 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKVVITTYEGQHDHE 347
                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23107173IPR003657WRKY domain
PROSITE profilePS5081119.336109173IPR003657WRKY domain
SuperFamilySSF1182902.09E-22110173IPR003657WRKY domain
SMARTSM007743.0E-29114172IPR003657WRKY domain
PfamPF031063.4E-21115171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-35274349IPR003657WRKY domain
SuperFamilySSF1182901.31E-28281349IPR003657WRKY domain
PROSITE profilePS5081134.635284349IPR003657WRKY domain
SMARTSM007742.4E-37289348IPR003657WRKY domain
PfamPF031069.7E-26290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVSSDKSADQ NIPSDKLQQR VSLDSDTTLS QGHDTKNDLS KPEEASILSI VVKNEEGKDS  60
DAIACALESD QEGSTCSLPL EKPLQNPDTL SHELPRLQSS QEFPSIIRIR EKVSKDGYNW  120
RKYGQKHVKG NEFIRSYYKC THPNCLAKKQ LQQSNNGHIT DSICIGQHNH PRPQLNSTVS  180
VECVLPVVEQ APHKSSLATV EDKASVEHGC MPQQIQPLQS FPPAKVSPVN KLNASHLSLT  240
KAKNQVHDNE EPESKRLKKD NTNPDVTRVD MSTRESRVVV QTSSEVDLVN DGYRWRKYGQ  300
KLVKGNTNPR SYYRCSNPGC PVKKHVERAS HDSKVVITTY EGQHDHEIPP GRTVTQNAAT  360
NARTTASNGK AGTKSEGNIT DDTGERSGLG SASRLTEQLN GESITKSKAG DMVEFCVISL  420
SNEGPEIKLS EQQQQKDNSA TKDDSVSNDV ISHSSSGVLC RSNEQLKGEV KPISEGSKDC  480
LNVVAVHDTR STESEFNKQS TADAEPVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-37276351176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43954.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518571.10.0WRKY transcription factor 1
RefseqXP_028222491.10.0WRKY transcription factor 1-like
RefseqXP_028222500.10.0WRKY transcription factor 1-like
SwissprotQ9SI374e-78WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0B2SI700.0A0A0B2SI70_GLYSO; WRKY transcription factor 1
STRINGGLYMA02G47650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.29e-79zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]