PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43953.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 541aa    MW: 60726.6 Da    PI: 6.1054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43953.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.93e-1401715411374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++ L++cA+a+s++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++yk+l+++e +   s+e l+++++++ev+P++kf+++ aN
  KHN43953.1 171 LKHILIACAKAISDDDLLMAQWLMDELRQMVSVSGDPFQRLGAYMLEGLVARLAASGSSIYKSLRCKEPE---SAELLSYMHILYEVCPYFKFGYMSAN 266
                 6899*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  d++l++L v
  KHN43953.1 267 GAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAISGCDVQLHNLGV 364
                 **************************************************998899999************************.88899********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++l+re++eri+vE+++l+r++v
  KHN43953.1 365 RPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLSREHKERINVEQHCLARDLV 463
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr++e++g+l+lgW++r Lv+ +aW+
  KHN43953.1 464 NIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSDR-YRLQERDGALYLGWMNRDLVASCAWK 541
                 **************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.561145522IPR005202Transcription factor GRAS
PfamPF035141.0E-137171541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MQASEQHRNS SMYYQPLQQI EAYCLPQYRT LNPQLYYHDG GHGTQFSTPS SSELYCTLES  60
SSVALYNSPS TVSFSPNGSP ISQQDSQSYP PDQYHSPENT YGSPMSGSCI TDDLSSFNLK  120
HKLRELESVM LGPDSDNLDS YDSAISNGNN FVPLEMDGWK QTMVAISSKN LKHILIACAK  180
AISDDDLLMA QWLMDELRQM VSVSGDPFQR LGAYMLEGLV ARLAASGSSI YKSLRCKEPE  240
SAELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQIGQGS QWITLIQAFA  300
ARPGGPPHIR ITGIDDSTSA YARGGGLHIV GRRLSKLAEH FKVPFEFHAA AISGCDVQLH  360
NLGVRPGEAL AVNFAFMLHH MPDESVSTQN HRDRLLRLVR SLSPKVVTLV EQESNTNTAA  420
FFPRFLETLD YYTAMFESID VTLSREHKER INVEQHCLAR DLVNIIACEG VERVERHEVL  480
GKWRSRFAMA GFTPYPLSSL VNGTIKKLLE NYSDRYRLQE RDGALYLGWM NRDLVASCAW  540
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6217854026378Protein SCARECROW
5b3h_A5e-6217854025377Protein SCARECROW
5b3h_D5e-6217854025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519666.10.0scarecrow-like transcription factor PAT1
RefseqXP_003519667.10.0scarecrow-like transcription factor PAT1
RefseqXP_006575744.10.0scarecrow-like transcription factor PAT1
RefseqXP_028222456.10.0scarecrow-like transcription factor PAT1
RefseqXP_028222466.10.0scarecrow-like transcription factor PAT1
RefseqXP_028222477.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B2SGK30.0A0A0B2SGK3_GLYSO; Scarecrow-like transcription factor PAT1
TrEMBLI1JJQ80.0I1JJQ8_SOYBN; Uncharacterized protein
STRINGGLYMA02G47640.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]