PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 545aa MW: 61468.8 Da PI: 5.3737 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 435.5 | 4.1e-133 | 176 | 545 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +e L +cA+ v+ +d+e +++l+++l++++s +gdp+qRl ay++eAL arla+s+s++yk l+++e + se l+ ++l++e++P+lkf+++ aN KHN43872.1 176 KEMLCTCAKTVAVNDMETTEWLMSELRKMVSVSGDPIQRLGAYMLEALVARLASSGSTIYKVLKCKEPT---GSELLSHMHLLYEICPYLKFGYMSANG 271 789*****************************************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aI ea+++e++vHiiDf+i+qG+QW++L+qaLa Rp+gpp++RiTg+++++s ++ le +g rL+ +A++ +vpfef++ + + +++el++L+++ KHN43872.1 272 AIAEAMKEESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAyaREGGLEIVGARLSTLAQSYNVPFEFHA-IRASPTEVELKDLALQ 369 *************************************************998899999************************.5888999********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 pgEa+aVn++++lh+++desv++ ++rd++++l k lsPk+v++veqe+ +n+ +F+ rf+e+++yy a+f+s+++ lpre++eri+vE+++l+re+vn KHN43872.1 370 PGEAIAVNFAMMLHHVPDESVDSGNHRDRLVRLAKCLSPKIVTLVEQESHTNNLPFFPRFVETMNYYLAIFESIDVALPREHKERINVEQHCLAREVVN 468 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++aceg+er+erhe l+kWr+r+++aGF p+pl++++++++k l r + ++ y++ee++g+l+lgW+++ L++ +aWr KHN43872.1 469 LIACEGEERVERHELLKKWRSRFTMAGFAPYPLNSFITCSIKNLQRSYRGH-YTLEERDGALCLGWMNQVLITSCAWR 545 ***********************************************9966.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.669 | 149 | 526 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-130 | 176 | 545 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MQMSQKHKMS YDSSRFTSEP VQNLGSCCFL QSGNLDYYSS SDNSSHATYP SVCTFEQYCT 60 LESSTNNNLP SLNSSSTVSF SPNNSPVSKL QSKSNVLSSQ NSLELVNDSL ENESCLTLNN 120 DELRHKIREL ESALLGHDTY ILDTYDTIIP EESDSFMLEA ERWKRMMEMI SRGDLKEMLC 180 TCAKTVAVND METTEWLMSE LRKMVSVSGD PIQRLGAYML EALVARLASS GSTIYKVLKC 240 KEPTGSELLS HMHLLYEICP YLKFGYMSAN GAIAEAMKEE SEVHIIDFQI NQGIQWVSLI 300 QALAGRPGGP PKIRITGFDD STSAYAREGG LEIVGARLST LAQSYNVPFE FHAIRASPTE 360 VELKDLALQP GEAIAVNFAM MLHHVPDESV DSGNHRDRLV RLAKCLSPKI VTLVEQESHT 420 NNLPFFPRFV ETMNYYLAIF ESIDVALPRE HKERINVEQH CLAREVVNLI ACEGEERVER 480 HELLKKWRSR FTMAGFAPYP LNSFITCSIK NLQRSYRGHY TLEERDGALC LGWMNQVLIT 540 SCAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-60 | 179 | 545 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43872.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519619.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_028221454.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A445LW17 | 0.0 | A0A445LW17_GLYSO; Scarecrow-like protein 5 | ||||
STRING | GLYMA02G46730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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