PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 24358 Da PI: 8.4009 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.6 | 3.5e-07 | 6 | 46 | 52 | 91 |
FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +r+ trt+C +l+v +++ w+v+ +++ HnHel+p KHN43827.1 6 GDHRPMTRTKCPGRLHVLLDYkIFMWRVSIFDETHNHELTP 46 568999**************97899*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10551 | 3.6E-8 | 168 | 209 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVDRKGDHRP MTRTKCPGRL HVLLDYKIFM WRVSIFDETH NHELTPVNHV HRMVRYHVMS 60 NLDKAQVDSL HSFGVRIYCI MGYLLGQRGS YDSIGFLRSD LYNHLHQKKR LIIKEGDVCV 120 ALSYFEGKDV IDPMFYSKIE TSTDEKLNHL FLADGCSRSN FQCFGDIFAF DATYKKNRCN 180 KPLVIFLGCN HRSHINIFGC SLLTDETTGT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43827.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 3e-70 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0B2SHN1 | 1e-155 | A0A0B2SHN1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA07G35355.1 | 1e-39 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-30 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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