PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43816.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 545aa    MW: 61231 Da    PI: 5.0957
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43816.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.61.6e-1291755441373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+e L++cAea++ +d+e +++l+++l++++s +g+p+qRl ay++e   ar+a s+s++yk+l++se +     e l+++++++e++P++kf+++ aN
  KHN43816.1 175 LKEMLYTCAEAMARNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARMAASGSTIYKSLKCSEPT---GNELLSYMHVLYEICPYFKFGYMSAN 270
                 5789*****************************************************************9...99************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea+++e++vHi+Df+i+qG+QW++L+qaLa Rp+gpp++Ri gv+++ s   + + l  +g+rL+  A++++vpfefn+ v    ++++le+L++
  KHN43816.1 271 GAIAEALKEESEVHIVDFQIGQGTQWVSLIQALAHRPGGPPKIRISGVDDSYSAyaRGRGLDIVGKRLSAHAQSCHVPFEFNA-VRVPASQVQLEDLEL 368
                 **************************************************87779999*************************.7999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  p Ea+aVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf e+++yy a+f+s+++ lpre++eri+vE+++l+re+v
  KHN43816.1 369 LPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKRLSPKVVTLVEQEFSTNNAPFLQRFDETMKYYLAVFESIDTVLPREHKERINVEQHCLAREVV 467
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l+lgW+++ L++ +aW
  KHN43816.1 468 NLIACEGEERVERHELLNKWKMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGALFLGWMNQVLIASCAW 544
                 **************************************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.823149526IPR005202Transcription factor GRAS
PfamPF035145.7E-127175544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQTSQNHKIS YGSGGFYVEP VQNLESYCMP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT  60
LESASTGNSF PNQNSPPALS FSSNNSPLSK LESNSYVLRP QHSLEIASGS PEDDSYLAHD  120
LDDLTHKIRE LETAMLGPNA DMLDIYGTVI PEPDSFLLEA EKWKKLMEMS SRGDLKEMLY  180
TCAEAMARND METTDWLVSE LRKMVSISGN PIQRLGAYIL ESFVARMAAS GSTIYKSLKC  240
SEPTGNELLS YMHVLYEICP YFKFGYMSAN GAIAEALKEE SEVHIVDFQI GQGTQWVSLI  300
QALAHRPGGP PKIRISGVDD SYSAYARGRG LDIVGKRLSA HAQSCHVPFE FNAVRVPASQ  360
VQLEDLELLP YEAVAVNFAI SLHHVPDESV NSHNHRDRLL RLAKRLSPKV VTLVEQEFST  420
NNAPFLQRFD ETMKYYLAVF ESIDTVLPRE HKERINVEQH CLAREVVNLI ACEGEERVER  480
HELLNKWKMR FTKAGFTPYP LSSVINSSIK DLLQSYHGHY TLEERDGALF LGWMNQVLIA  540
SCAWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-571795448374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43816.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028214114.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0B2SAN60.0A0A0B2SAN6_GLYSO; Scarecrow-like protein 5
STRINGGLYMA18G09030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]