PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43754.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 281aa    MW: 31062.1 Da    PI: 8.4945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43754.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14185230555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn+ Er+RRd iN+++  L+ l+P+a      K +Ka++L ++++Y+k+Lq
  KHN43754.1 185 HNQSERKRRDIINQKMKALQGLVPNA-----NKTDKASMLDEVINYLKQLQ 230
                 9************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17178239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-13185234No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16185238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11185230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-15186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
FRSNYDEILG LIWENGQLSM HGLAGLQPTN PTQEKPILNS AHDTLESIVQ HATCPRYQPS  60
KFTREKGHAP TSNRKNNSIG APDGGEVQGV PSSARKRTWS NANNMLEECD ILSGCASAGA  120
TFCRDNDTAM ITWASLESGR NLKTIEEDSA CHCGSEIRDN QDDRDSKAEV GQSNSKRRSR  180
TAAIHNQSER KRRDIINQKM KALQGLVPNA NKTDKASMLD EVINYLKQLQ AQIQMMNRTS  240
LPQMMVPLAM QQQFQMSMLA RMGAAGLGMG MGMVNMNMGR C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175192KRRSRTAAIHNQSERKRR
2188193ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229028.10.0transcription factor UNE10-like
TrEMBLA0A0B2SHP80.0A0A0B2SHP8_GLYSO; Transcription factor PIF7 (Fragment)
TrEMBLA0A445L1440.0A0A445L144_GLYSO; Transcription factor PIF7 isoform A (Fragment)
STRINGGLYMA06G21495.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-40phytochrome-interacting factor7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]