PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43745.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 168aa    MW: 18885.7 Da    PI: 4.4681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43745.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.8e-152451056
         AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +++g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  KHN43745.1  2 RNWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 45
                57**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-27153IPR001471AP2/ERF domain
PROSITE profilePS5103219.981152IPR001471AP2/ERF domain
SMARTSM003803.4E-28158IPR001471AP2/ERF domain
CDDcd000183.47E-28154No hitNo description
PfamPF008473.4E-10245IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL AIKGHSAYLN FPELAQELPR  60
PASTSPKDIQ AAASKAANTA FEVVKHCQIT EEQEQEQNQA EQETSSTLSM DNTQEPSSSH  120
STNDDDTLFD LPDLFPDGNN GLCSFSSWHL CAVDSGFRLE ESFFWENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-132522172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0989110.0BT098911.1 Soybean clone JCVI-FLGm-13A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225088.11e-125ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-56ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A445LAB01e-123A0A445LAB0_GLYSO; Ethylene-responsive transcription factor ERF034
STRINGGLYMA03G27050.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]