PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 1051aa MW: 117144 Da PI: 9.3787 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.9 | 6.3e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e e+++ lg+t +qV+ +F +R + ++ KHN43531.1 69 KRPRDLLNPKAVNYMQSVFSIKDAISKKELHEISALLGVTVTQVRDFFNAQRSRVRR 125 799**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.106 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-5 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-7 | 68 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 69 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.9E-4 | 69 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.29E-5 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 2.4E-5 | 225 | 309 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 4.45E-5 | 231 | 309 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1051 aa Download sequence Send to blast |
MDAWNEDFSV LEIGSSAESF QKFLVSQKEL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSVFSIK DAISKKELHE ISALLGVTVT QVRDFFNAQR 120 SRVRRSVQLS RERVLSSNSC EEPHDDQINS DPMRPINPTP LNSAGQSNTE EASCSTQEVA 180 LPDLDDSDKQ FVDNIFSLIQ KEETFSGQEK LMEWILTIQN FSVLLWFLSR GGGMNLATWL 240 SKAAAEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRTSDI SNRARVLLSK 300 WSKLFARNQV IKKPNGVKIS IDGHKEMMLS QRQACILSLF CAQFIGTSFL NYYDFYFCSI 360 GQFMGSESWH SNIDVPEDIL ALSSECSDNF RKMGSPQGVK LLPPSLDDSN KKSSLGVSSS 420 QSRERRKVQL VEQPGQKSVS RSSQVTRAGP VSQGRPMSAD DIQKAKMRAL FMQSKYGKSG 480 SKESKETKID SPNKQPQTNP ASIAACSSKV PTPPKIEENK KPLLLTSKTT NRLEASYSKP 540 KMDVKEPLWE KCKRVQIPWR TPAEVELKDT WRVGGGENSK EVEVQRNRNR RDKEIIYKTV 600 QEMPPNPKEP WDLEMDYDDT LTLEIPIEQL PDGDGADIAI SPNQVGTHTV QGVASTSSTG 660 VATAEPDLEL LAVLLKNPEL VFALTSGQGG SIPNQETVKL LDMIKSGGVN LGLSENTNGS 720 YGTSVKSPEK VEVSLPSPTP LSDPRTSGWS SEASKNPFSR RSLAPDRITQ NHAAVATTNL 780 LSQIPITGTT VRQQPTVVVP SSRHLTSTSV SPYSLPHATN VIPEKPSPLG QVQTSSDVGL 840 TMKNLTTANA SSVNFPGTHS TLALRGDGTN YVKPVPNLSV QHEGLSNSFR QPFMPPSPTP 900 SHSSLQQQRH QHLTQEVHYT EPPYRNPGRS YPPQIEKSDH GSDNMWRVRQ DHVSSSYHSQ 960 RNHNNNYNTM VGGSRQSGFW DRNNHARGEF ESWSPENSPT RNPRYAPGRN YPESRMNHGR 1020 NPRPEWSRQR GSSGHWDPGR QGNRKWHDQR R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43531.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235349 | 0.0 | AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553647.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Refseq | XP_028217888.1 | 0.0 | homeobox protein LUMINIDEPENDENS-like | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A445FJL7 | 0.0 | A0A445FJL7_GLYSO; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | I1NB35 | 0.0 | I1NB35_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G39620.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-138 | HB-other family protein |
Publications ? help Back to Top | |||
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