PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43491.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 194aa    MW: 22105.1 Da    PI: 9.3524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43491.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-194896355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  KHN43491.1 48 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 96
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-2247105IPR016177DNA-binding domain
PROSITE profilePS5103223.80247104IPR001471AP2/ERF domain
SMARTSM003805.0E-3947110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-3347105IPR001471AP2/ERF domain
CDDcd000183.37E-3248105No hitNo description
PRINTSPR003673.9E-124859IPR001471AP2/ERF domain
PfamPF008474.1E-124896IPR001471AP2/ERF domain
PRINTSPR003673.9E-127086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MCGGAIIADF IPRQRPRTLT ASELWPKRSE PQPQPPPPPV KRQRKNLYRG IRQRPWGKWA  60
AEIRDPRKGV RVWLGTFNTA EEAARAYDKE ARKIRGKKAK VNFPNEDDPL PQYGSCKSLN  120
LEFGYDLNQT GLFPSSNADE NCGSHVAYSV TEANNKVEKL SEELMAYENL MRFYQIPENV  180
VGDLWAFPDT SPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-22481061574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922100.0BT092210.1 Soybean clone JCVI-FLGm-10I12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235127.11e-143uncharacterized protein LOC100527371
RefseqXP_028217287.11e-143ethylene-responsive transcription factor ERF071
SwissprotO222593e-49ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0R0F1951e-141A0A0R0F195_SOYBN; Uncharacterized protein
TrEMBLA0A445FJL91e-141A0A445FJL9_GLYSO; Ethylene-responsive transcription factor ERF071
TrEMBLC6T4491e-142C6T449_SOYBN; Uncharacterized protein
STRINGGLYMA19G40070.21e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-50ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  3. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  4. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  5. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]