PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43404.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 518aa    MW: 57357.2 Da    PI: 8.7334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43404.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.7e-14340385454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  hn  E++RR++iN+++ +L++l+P++      K++Ka++L  A++Y+k L
  KHN43404.1 340 VHNLSEKKRREKINKKMRTLKDLIPNC-----NKVDKASMLDDAIDYLKTL 385
                 5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18334395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-15334390No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17334392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.682336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-12340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMIQKMFDST RSGMTRSSSH VASINDNDFL ELVWENGEIV VRGGSSSNRS RKTNEERIHE  60
DASINKRTRL NPLYSLEDHF LPQRDSDMSS SHQSNNGQDS CQSSESKNSC KLHEEFANLL  120
KPVTTGNSHL QQCLPSSPLK KQRTDSTQTP RPAKVNFSNF SIPAVFLKST TTTTTNNYQG  180
NSATQQTKNH SSPARVEEIE ALKVDKSAKE TQCFQKQTSL TVERSTKLPT PAVDEHSEAA  240
GHNCGVLGIH RSQGQTSTSE ALRAKAKAYN NNNINMCHEP LLASSSVCSL GASNDPNLGF  300
RKHEDTDDST YLSDNDGEPE DMVKQDREGN RVKRSRNPEV HNLSEKKRRE KINKKMRTLK  360
DLIPNCNKVD KASMLDDAID YLKTLKLQLQ ANFQIMSMGS GLWPLMMGFR PPQLPIPPLS  420
AITDSRLIQM FGSPNQIPPM PMPHAPFFPI IGNSATQSHL ANNTTTTAAA TTNLAEHLAN  480
SLHGNATKLA PPSQISFQHH HTSTSTPTLA TPFIFPQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345350KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311290.0KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217069.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A445FK270.0A0A445FK27_GLYSO; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform A
STRINGGLYMA19G40980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-28phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]