PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43378.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 633aa    MW: 68879.1 Da    PI: 6.0405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43378.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.6e-16404450455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  KHN43378.1 404 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 450
                 5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-20397459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20398462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.171400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-17403454No hitNo description
PfamPF000101.9E-13404450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MPLHELYRVA KGKLDPIEMN NNTCAVDQSS VPNNDLLELV WEKGQISVQG QFSRARVSPN  60
CKTLPSHCLP SHTPIGYANN AISTNTRMGK CGNLGAELNE IRRLVPSGEV DLSEEEEDMV  120
MPWFNYGMED SLQHGYSTDF FHEPSSYGVT MNELSASNNF SLLDRRNNCT KIFRDTHKHS  180
SYAPVRSSVA DIAENNANNV PSGSSGFSSL KMERQGPVMC SSSSTMMNFS HFAKPAAIVK  240
ANIENIGLAS RSGNEGIQIK SAAATVTNPA ESTKVELSGE CPKKPATHNQ DQDVTVSTKC  300
DPSCKDVSKV DQNQTSNLVV GESVNKGHEA VEKGVELAVV SSSVCSGNGP ERGSEDPNQN  360
LKRKSKDTED FESQSEDVEE ESVGVNKEVP ARRNGAKKSR SAEVHNLSER RRRDRINEKM  420
RALQELIPNC NKADKASMLD EAIEYLKTLQ LQLQIMSMGT SLCMPAMMLH PGMQHMHAPH  480
MGPFSPIGVG MQMRLGVGCG MGMPDANDIE SSRFIQVPQM QGTHHPSQGH PIPMPHAPIF  540
SFPGEPFINP STLGLVETVD KASSAFGLIK DQIPQLAQNT NNGCNSTNQM STVQCEATIG  600
GFEHSILVLN SGHATSVNDR GAINPSTEDN PYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408413ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN43378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351800.0AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216907.10.0transcription factor PIF3-like
TrEMBLA0A445FK480.0A0A445FK48_GLYSO; Transcription factor PIF3 isoform A
STRINGGLYMA19G41261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-57phytochrome interacting factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]