PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN43204.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 600aa MW: 68148.6 Da PI: 6.8689

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN43204.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.4e-14	105	165	2	67
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 Wt++evlaL ++r++me++l + W++vs++++e gf++s+++Ckek+e+ ++++ +i++ KHN43204.1 105 WTNDEVLALFRIRSSMENWLPEL-----TWDHVSRRLAEVGFKKSAEKCKEKFEDESRYFDNINNY 165 *****************9987.....9*****************************999875 PP
2	trihelix	91.7	7.6e-29	459	544	1	85
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++evlaLi++r ++ ++ + k+plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql KHN43204.1 459 RWPRDEVLALINLRCTSLSSNEEkEGNKGPLWERISQGMSALGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQL 544 8***********988877776256899******************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.086	97	156	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-9	103	168	No hit	No description
CDD	cd12203	1.71E-25	458	524	No hit	No description
Pfam	PF13837	4.0E-19	458	544	No hit	No description
PROSITE profile	PS50090	6.388	459	517	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MFDGAPDQFH QFIAPRTTLP LHLSFPLHHH ASSTPPPNTF LPFDPYNPSS HHLLPSLQTN 60 HLLHPPTTSP THKHEQDKVI APIVNNNEEI QRDQRQLPDQ LTDSWTNDEV LALFRIRSSM 120 ENWLPELTWD HVSRRLAEVG FKKSAEKCKE KFEDESRYFD NINNYGKNNF RFLISELEEL 180 CQNSDPGAHD HNGVVVRSEK THHLGGHALE ENSRDIETTT ATKRCDIGSD TVVEKSNSKV 240 RKRKRRDRFE MFKGFCESVV NKMMAQQEET HNKLLEDMVK RDQEKFAREE AWKKQELDRM 300 KKELEIMAQE QAIAGDRQAT IIEFLKKCAT TTITSLSPPS QNAKYYITND SNLPNCASHS 360 QNPNNPSNED NNLEPTPSSK MIQNHGQTTL GAENPSTSDT LLQVPSSSNS SPTTHNPSSS 420 LNSHNNIIPL ESNSVSTYKP TSTTPMASSE NSKDDIGRRW PRDEVLALIN LRCTSLSSNE 480 EKEGNKGPLW ERISQGMSAL GYKRSAKRCK EKWENINKYF RKTKDNVNKK RSLNSRTCPY 540 FHQLSCLYGQ GKIVPQSERE GNYCLNPTPN SGQVPPDDDH QVQDDESSQV GSAGLVQYAC

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MFDGAPDQFH QFIAPRTTLP LHLSFPLHHH ASSTPPPNTF LPFDPYNPSS HHLLPSLQTN  60
HLLHPPTTSP THKHEQDKVI APIVNNNEEI QRDQRQLPDQ LTDSWTNDEV LALFRIRSSM  120
ENWLPELTWD HVSRRLAEVG FKKSAEKCKE KFEDESRYFD NINNYGKNNF RFLISELEEL  180
CQNSDPGAHD HNGVVVRSEK THHLGGHALE ENSRDIETTT ATKRCDIGSD TVVEKSNSKV  240
RKRKRRDRFE MFKGFCESVV NKMMAQQEET HNKLLEDMVK RDQEKFAREE AWKKQELDRM  300
KKELEIMAQE QAIAGDRQAT IIEFLKKCAT TTITSLSPPS QNAKYYITND SNLPNCASHS  360
QNPNNPSNED NNLEPTPSSK MIQNHGQTTL GAENPSTSDT LLQVPSSSNS SPTTHNPSSS  420
LNSHNNIIPL ESNSVSTYKP TSTTPMASSE NSKDDIGRRW PRDEVLALIN LRCTSLSSNE  480
EKEGNKGPLW ERISQGMSAL GYKRSAKRCK EKWENINKYF RKTKDNVNKK RSLNSRTCPY  540
FHQLSCLYGQ GKIVPQSERE GNYCLNPTPN SGQVPPDDDH QVQDDESSQV GSAGLVQYAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	RKRKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN43204.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	4e-96	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006604841.1	0.0	trihelix transcription factor GTL2
Refseq	XP_006604842.1	0.0	trihelix transcription factor GTL2
Refseq	XP_028219023.1	0.0	trihelix transcription factor GTL2-like isoform X1
Refseq	XP_028219024.1	0.0	trihelix transcription factor GTL2-like isoform X1
TrEMBL	A0A445FL14	0.0	A0A445FL14_GLYSO; Trihelix transcription factor GTL2 isoform A
TrEMBL	I1NC80	0.0	I1NC80_SOYBN; Uncharacterized protein
STRING	GLYMA19G43280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5043	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	3e-68	Trihelix family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]