PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN43154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22052.7 Da PI: 6.3957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 67 | 116 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a++ ++g KHN43154.1 67 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALVMRG 116 9*******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-31 | 66 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-14 | 66 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 66 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-36 | 66 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-23 | 67 | 126 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.74E-21 | 67 | 125 | No hit | No description |
PRINTS | PR00367 | 7.1E-11 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSSSNFESPY EYSCSSSSSR HNQYSLPFNH NDSQEMLLYQ VLTQAGATSS VSHGSGSVVE 60 AEVSVSYRGV RRRPWGKFAA EIRDSTRNGV RVWLGTFDTA EAAALAYDQA ALVMRGSMAV 120 LNFPAEIVRQ SLRNMEQYGS FQEGSSPVLE LKKRHSMKRK SETKKHQLHD VMVLEDLGAE 180 YLEHLLTLSQ DMDMDAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-28 | 67 | 127 | 6 | 66 | ATERF1 |
3gcc_A | 4e-28 | 67 | 127 | 6 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN43154.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553765.1 | 1e-146 | ethylene-responsive transcription factor 1B | ||||
Refseq | XP_028218098.1 | 1e-146 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-65 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | K7N071 | 1e-145 | K7N071_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G43815.1 | 1e-146 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-47 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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