PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 328aa    MW: 37983.1 Da    PI: 7.0285
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42959.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.21.7e-15481102390
        FAR1  23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 ++++e++++++ Cs  g++++++ +     ++r++trtgC a++++++ ++++w++ ++el+H H+++
  KHN42959.1  48 RKKKECYRAKLSCSSAGFKKKSEAN-----NPRPKTRTGCPAMIVIRMVESKRWRIVEVELQHDHQVS 110
                 67899***************99888.....9**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1348111IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.741233264IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-4236260IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5239266IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEEVCLNSEP LFDERNEVDV EGNSSIAEHD LESLNSQTNN SPLPTVDRKK KECYRAKLSC  60
SSAGFKKKSE ANNPRPKTRT GCPAMIVIRM VESKRWRIVE VELQHDHQVS PQSKRFYKSH  120
KEMILEASKS RPLPEPVTEV HTIRKHLKEA MADLESRKVS FELKTRCNFE VQLAKGFTKE  180
IFQKFQSEVD GMYSCFNTRQ VSVNGSIITY IVKESVEVEG NEKGVKSFED LYETTELDIR  240
CICSLFNYKG YLCKHALNVL NYNSIEEIPS QYILNRWRRD FKQTFNQFHV SDNIDTYNPV  300
DLYTHLFNSA LPVLEVGAQS REHYMVAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219794.11e-112protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A0B0MXF21e-138A0A0B0MXF2_GOSAR; Far1-related sequence 6-like protein
STRINGGLYMA07G35100.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-53FAR1-related sequence 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]