PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 328aa MW: 37983.1 Da PI: 7.0285 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.2 | 1.7e-15 | 48 | 110 | 23 | 90 |
FAR1 23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++e++++++ Cs g++++++ + ++r++trtgC a++++++ ++++w++ ++el+H H+++ KHN42959.1 48 RKKKECYRAKLSCSSAGFKKKSEAN-----NPRPKTRTGCPAMIVIRMVESKRWRIVEVELQHDHQVS 110 67899***************99888.....9**********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-13 | 48 | 111 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.741 | 233 | 264 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.7E-4 | 236 | 260 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.2E-5 | 239 | 266 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEEVCLNSEP LFDERNEVDV EGNSSIAEHD LESLNSQTNN SPLPTVDRKK KECYRAKLSC 60 SSAGFKKKSE ANNPRPKTRT GCPAMIVIRM VESKRWRIVE VELQHDHQVS PQSKRFYKSH 120 KEMILEASKS RPLPEPVTEV HTIRKHLKEA MADLESRKVS FELKTRCNFE VQLAKGFTKE 180 IFQKFQSEVD GMYSCFNTRQ VSVNGSIITY IVKESVEVEG NEKGVKSFED LYETTELDIR 240 CICSLFNYKG YLCKHALNVL NYNSIEEIPS QYILNRWRRD FKQTFNQFHV SDNIDTYNPV 300 DLYTHLFNSA LPVLEVGAQS REHYMVAV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42959.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028219794.1 | 1e-112 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A0B0MXF2 | 1e-138 | A0A0B0MXF2_GOSAR; Far1-related sequence 6-like protein | ||||
STRING | GLYMA07G35100.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 2e-53 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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