PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 227aa MW: 25947.7 Da PI: 5.6667 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.4 | 4.1e-07 | 71 | 107 | 2 | 39 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 fY+eYA++ GF vrk +++ g+i k +f C+ke KHN42936.1 71 FYREYARSHGFVVRKYDVSQN-VAGNINKCQFICNKEV 107 9***************99998.7888**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-4 | 71 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
SHVNLDDNKE MSHNVDVNSD ENDNGDKGDV GIENVEDRED ATNEEDRRIV GLVSDEINVL 60 DFGSEEHAFI FYREYARSHG FVVRKYDVSQ NVAGNINKCQ FICNKEVSKF VETHNHHLTP 120 VNHVHHMPEY QVLFDLDKAQ VDSLHSFGSR TCQIMGYLLA KKGGYGSIRS LKNDLHNHKK 180 KIGLSDLEGK SNNDPTFYSI IEITIDGKLK HLFWVDGCSK SDFQCFW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | GLYMA07G35355.1 | 1e-167 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 5e-12 | FAR1 family protein |
Publications ? help Back to Top | |||
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