PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42875.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 360aa    MW: 40776.4 Da    PI: 7.6326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42875.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-1522107899
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +l++g+l lp  f++++g    +   ++l+++++ +W+++   +k++g+++++kGWke++   gL+ g  + F+++g+s f  +v++f++
  KHN42875.1  22 RASLAHGLLKLPTIFTKKYGDGMSN--PVSLKSPDSTRWKIYW--TKHDGEIWFQKGWKEYATYYGLDHGHLLFFEYEGTSHF--NVHIFDT 107
                 55678999***********766444..5***************..**********************************9999..9**9997 PP
2B352.87.1e-17237326298
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                 fk  ++++    + l +p +fae +  kk ++  ++le ++gr+W v +      ++ ++t+GW +F+++n+L++gD++vF+l+++ ++  ++v++fr
  KHN42875.1 237 FKLVMNPSFIYGDYLEIPPEFAEIYL-KK-THAVVILEVLEGRTWPVIC------SAPTITGGWHKFASENHLNVGDVCVFELIQKiQGLAFKVSIFR 326
                 5788899999999*********7664.44.45689**************......4567**************************99***99**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.54715108IPR003340B3 DNA binding domain
CDDcd100171.48E-1215106No hitNo description
SuperFamilySSF1019361.96E-1915108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-1915108IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.3E-1216108IPR003340B3 DNA binding domain
PfamPF023621.6E-1223107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-23229326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-23230326IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-21235326No hitNo description
PROSITE profilePS5086313.239236328IPR003340B3 DNA binding domain
SMARTSM010191.0E-11237328IPR003340B3 DNA binding domain
PfamPF023627.3E-15237327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTSACNKNPK PIAVRFFKNI FRASLAHGLL KLPTIFTKKY GDGMSNPVSL KSPDSTRWKI  60
YWTKHDGEIW FQKGWKEYAT YYGLDHGHLL FFEYEGTSHF NVHIFDTSAV EIDYPSNGTH  120
HGKDSSHVEI SDDPVEILDE KFSCQKTREK STVSSPQPTK KMKAGLTTNV KKRPNVVNLH  180
RHVQIRSIKS QKAKFVKHEL DEDESRGIFH TERPKGEQLT STALNRATAF RSENPSFKLV  240
MNPSFIYGDY LEIPPEFAEI YLKKTHAVVI LEVLEGRTWP VICSAPTITG GWHKFASENH  300
LNVGDVCVFE LIQKIQGLAF KVSIFRGAEE PSCPISQASA DGFCEEVFCK DELECGDVTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-1622332635141B3 domain-containing transcription factor VRN1
4i1k_B9e-1622332635141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535137.10.0B3 domain-containing transcription factor VRN1
RefseqXP_028248340.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0B2SCS20.0A0A0B2SCS2_GLYSO; B3 domain-containing transcription factor VRN1-like protein
TrEMBLK7LDA10.0K7LDA1_SOYBN; Uncharacterized protein
STRINGGLYMA09G18790.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-43B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]