PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42821.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 476aa    MW: 52124.5 Da    PI: 8.4641
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42821.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25166222259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e++++ ++v+ei+Y++eH h+
  KHN42821.1 166 SDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKK-IECCDDSGHVIEIVYKSEHSHD 222
                 7********************************98.*********************7 PP
2WRKY971.2e-30339395359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ ++ ++v+itY+g H+h+
  KHN42821.1 339 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHD 395
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-21159224IPR003657WRKY domain
PROSITE profilePS5081117.729160224IPR003657WRKY domain
SuperFamilySSF1182901.14E-20162224IPR003657WRKY domain
SMARTSM007742.1E-24165223IPR003657WRKY domain
PfamPF031067.1E-18167222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-31322397IPR003657WRKY domain
PROSITE profilePS5081131.869332397IPR003657WRKY domain
SuperFamilySSF1182904.32E-27333397IPR003657WRKY domain
SMARTSM007749.9E-35337396IPR003657WRKY domain
PfamPF031062.0E-23339394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDQRHGPQPL PESDTIGNDS HPKTQLTKET ERVVESLSDA ESRLCFIGLD VLYLQGSSTA  60
PNSGGKAESK ETVESPEKET IERGAVQPLQ TQTENRLQVS VCSIPLSDLS PTSVTQSLSI  120
VSSPTVQKQK ISTPKVNNTH VPEVDRKNPS GRKTLSAVSV ARTSASDGYN WRKYGQKQVK  180
SPTGSRSYYR CTHSDCCAKK IECCDDSGHV IEIVYKSEHS HDPPRKTNSI RENKFLSSSE  240
PIVENSVPEQ PVRVLKDADP SISSKESLQE APCSNDKKRQ NTSNISGNDK VILKEEHVNE  300
PEPKKMKKGD LTEMDSPVKP GKKPKFVVHA AGDVGISGDG YRWRKYGQKM VKGNPHPRNY  360
YRCTSAGCPV RKHIETAVDN SDAVIITYKG VHDHDMPVPK KRHGPPSAPL VAAAAPASMN  420
SLQVKKPDSP QNKKISTQWS VDTEGELTGE ALELGGEKAM ESARTLLSIG FEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-25325397274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42821.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312280.0KT031228.1 Glycine max clone HN_CCL_111 WRKY transcription factor (Glyma02g36510.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304481.10.0probable WRKY transcription factor 32
SwissprotP595831e-136WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0B2S8180.0A0A0B2S818_GLYSO; Putative WRKY transcription factor 32
STRINGGLYMA02G36510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-113WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]