PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42746.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1094aa    MW: 122728 Da    PI: 5.5282
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42746.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1169.74.4e-53211423118
        CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg......vevlycyYahseenptfq 95 
                 + ++rwl++ ei++iL n++ +++t+e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK         v+vl+cyYah+een++fq
  KHN42746.1  21 EAQHRWLRPAEICEILRNYQMFQITSEPPNGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKASMefsyvdVDVLHCYYAHGEENENFQ 119
                 349**********************************************************************9999**99****************** PP

        CG-1  96 rrcywlLeeelekivlvhylevk 118
                 rr+yw+Le ++ +iv+vhyl+vk
  KHN42746.1 120 RRSYWMLEPDMMHIVFVHYLDVK 142
                 ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.84515147IPR005559CG-1 DNA-binding domain
SMARTSM010763.8E-7518142IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-4621141IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.1E-5508596IPR013783Immunoglobulin-like fold
PfamPF018337.2E-6510595IPR002909IPT domain
SuperFamilySSF812961.33E-16510596IPR014756Immunoglobulin E-set
SuperFamilySSF484039.95E-16700804IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-15704805IPR020683Ankyrin repeat-containing domain
CDDcd002045.17E-12708798No hitNo description
PROSITE profilePS5029717.263710818IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.377743775IPR002110Ankyrin repeat
SMARTSM000154.2917939IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206918947IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.04E-7919968IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0076920938IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0071940962IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.285941965IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4943962IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MAERSCFGLG PRLDLQQLQL EAQHRWLRPA EICEILRNYQ MFQITSEPPN GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKASMEFSYV DVDVLHCYYA HGEENENFQR  120
RSYWMLEPDM MHIVFVHYLD VKVNKTNVGG KTYSDEVTSD SQKSSSLSSG FPRNYGSVPS  180
GSTDSMSPTS TLTSLCEDAD SEDIHQASSG LHSYRESQNL GNDRPMDKID ARSNSSYPMH  240
PFSGDHGQLP VSGAEYIPHV LGDKSRASDT TYIEGQRAQG IASWDNTMEQ SAGEYADPSL  300
VSSTTIPSSA VGNILEENHT VPGKLLGRKN ALTEEERGSQ PVQSNWQIPF EDNTGELPNW  360
GFTQSLGLEF GSDYGASLLG DVTNNAGPEI VPELFTFNGE LKEQSVHQNF SKLYTHGQSQ  420
PTLKSNSEYE VPGEASINYA LTMRRGLLDG EESLKKVDSF SRWMTKEFAG VDDLHMQSSP  480
GISWSTDECG DVIDDTSLNL SLSQDQLFSI NDFSPKWAYA ESEIEVLIVG TFLKSQPVVA  540
KCNWSCMFGE VEVPAEVLAD GILCCQAPPH KIGRVPFYVT CSNRFACSEV REFEYREGFD  600
RNIQFADCFN NSTEMVLHLR LVGLLSLNSV RTSNQVFEGD MDKRSLIFKL ISLKEEEEYS  660
SKEETTAEMD ISKHKLKELM FHKQVKEKLY SWLLHKVTET GKGPLVLDEE GQGVLHLIAA  720
LGYDWAINPI ITAGVNINFR DVNGWTALHW AAFCGRERTV AVLVSMGAAA GAWTDPCPEF  780
PSGRSPADLA SSKGHKGISG FLAESLLTGH LESLTMDENK DGRKETSGTK VVQTASERTA  840
TPVLYGDIPD AICLKDSLNA VRNATQAADR IYQVFRMQSF QRKQFAQYED DEFGLSDQQA  900
LSLLASKTCK SGQGEGLANA AAIQIQKKFR GWTKRKEFLI IRQRIVKIQA HVRGHQVRKQ  960
YKPIIWSVGI LEKVILRWRR KGSGLRGFRP AALNKVPEQP SESPKEDDYD YLKEGRKQSE  1020
VKFKKALSRV KSMVQYPEAR AQYRRVLNVV EDFRQTKGGN LNLINSEETV DGVEDLIDID  1080
MLLDDENFLP IAFD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42746.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579985.10.0calmodulin-binding transcription activator 2
RefseqXP_028232291.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0B2S7U80.0A0A0B2S7U8_GLYSO; Calmodulin-binding transcription activator 2
STRINGGLYMA05G24430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]