PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42604.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 365aa    MW: 40857.9 Da    PI: 5.9834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42604.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.4e-12190236455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  A++Y+k+Lq
  KHN42604.1 190 DHIIAERKRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 236
                 5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15190247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9191236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.45E-11191237No hitNo description
SuperFamilySSF474592.75E-15191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENNNTSMDA SEASWLSDLE TEDGCNLFRQ CHLETLLDDD EELLSHEIAS AFENLQQPLS  60
SESNTSYSET PMNSFTEETS FEKPIKQPKT NASSWNSSFT KHFSLSSSPS SPTSKILSFE  120
NSNSSPPNPN NTDQFHGIVV SAALSPKQIK TKGASVSLPH TRKRLSENQN FEAESPKGHR  180
SYKSPSHVRD HIIAERKRRE KLSQSLIALA ALIPGLKKMD KASVLGDAIK YVKELQERMR  240
MLEEEDKNRD VESVVMVKKQ RLSCCDDGSA SHEDEENSER LPRVEARVLE KDVLLRIHCQ  300
KQKGLLLNIL VEIQNLHLFV VNSSVLPFGD SVLDITIVAQ MGTGYNLTIN DLVKNLRVAT  360
LKSMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
2195200RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245058.10.0transcription factor bHLH18-like isoform X2
TrEMBLA0A445M5I10.0A0A445M5I1_GLYSO; Transcription factor bHLH25 isoform C
STRINGGLYMA01G40620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]