PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42602.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 341aa    MW: 38198.6 Da    PI: 5.7779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42602.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12170217355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  Av+Y+k+Lq
  KHN42602.1 170 QEHIIAERKRRENLSKRFIALSAILPGL-----KKMDKASVLGDAVKYVKQLQ 217
                 6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.142167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16171230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-13172221No hitNo description
SMARTSM003531.7E-14173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEIAYNYYLP ELQGIEDPTF FDQYQMDSFA CPLDDFDFES FSGSPESNSS YHFNSESTPN  60
CFPAESHDQS FTPARPTKRL KNTCASDFIS HKVSAFSSSQ LISFGHFNAP SPSHASQQFQ  120
NLDFDEKASS ENMDFAAFVS QGSYEDKSFL SSDNRTNQVG ITTRNPIQAQ EHIIAERKRR  180
ENLSKRFIAL SAILPGLKKM DKASVLGDAV KYVKQLQERV QTLEEQAAKR TLGSGVLVKR  240
SIIFADDETS DSHCEHSLPE VEVRVSGKDV LIRTQCDKHS GHAAMILSEL EKLYFIVQSS  300
SFLPFGNSKT DVTIIAQMNK ENCMTAKDLL GRLRQALVGH N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245010.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A445M5J20.0A0A445M5J2_GLYSO; Transcription factor bHLH25 isoform A
STRINGGLYMA01G40600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-56bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]