PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42544.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 291aa    MW: 33218.1 Da    PI: 6.5082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42544.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl
       KHN42544.1 15 KGLWSPEEDNKLRNHIIKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding50.54.8e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++ E++ +  ++++lG++ W+ Ia++++ gRt++++k++w++yl
       KHN42544.1  68 RGVFSKHEEDTIMVLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.9941062IPR017930Myb domain
SuperFamilySSF466896.74E-2813109IPR009057Homeodomain-like
SMARTSM007171.8E-111464IPR001005SANT/Myb domain
PfamPF002492.2E-131562IPR001005SANT/Myb domain
CDDcd001673.99E-101862No hitNo description
PROSITE profilePS5129423.78163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2466116IPR009057Homeodomain-like
SMARTSM007173.2E-1467115IPR001005SANT/Myb domain
PfamPF002498.3E-1568113IPR001005SANT/Myb domain
CDDcd001672.42E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MESQPLEKAK PKYRKGLWSP EEDNKLRNHI IKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGV FSKHEEDTIM VLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKEIKA  120
KEMESDKEIQ HASSSSDTME NPLSPQKLAT QDPSYSLLEN LDKSIAHNDN FFSQSYNFSK  180
EACQSSLPLP KLLFSEWLSV DQVDGGSSVN SDDSLVLGNE FDQNSTFQEA IMHMLEENFG  240
EEYHNSLIHS STTEVYNSQL KSTNQVDGSD FINCIPGNEL CSNFSLTNHA M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-221111623127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42544.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206856.10.0transcription factor LAF1-like
SwissprotQ9M0K48e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0B2SE190.0A0A0B2SE19_GLYSO; Transcription factor LAF1
STRINGGLYMA16G31280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.18e-62myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]