PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 657aa MW: 72566.3 Da PI: 6.1754 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.2 | 1.8e-28 | 198 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl KHN42494.1 198 KPRVVWSVELHRKFVSAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 251 79*******************.********************************8 PP | |||||||
2 | Response_reg | 77.1 | 6.2e-26 | 14 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+ + +++l+++l++ +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +++++++ + + Ga KHN42494.1 14 VLAVDDDSTCLMVLETLLRRCQY-HVTTTKNAITALNLLRENKtmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNDDPKMVMKGITHGAC 108 799********************.***************99999********************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + KHN42494.1 109 DYLLKPVRIEELQN 122 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.4E-167 | 1 | 656 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-42 | 11 | 146 | No hit | No description |
SuperFamily | SSF52172 | 2.99E-35 | 11 | 136 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.0E-31 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.416 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.1E-23 | 14 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.68E-26 | 15 | 128 | No hit | No description |
PROSITE profile | PS51294 | 10.715 | 195 | 254 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.96E-20 | 195 | 255 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-30 | 197 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-25 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-7 | 200 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 657 aa Download sequence Send to blast |
MDDLRDQFPI GMRVLAVDDD STCLMVLETL LRRCQYHVTT TKNAITALNL LRENKTMFDL 60 VISDVHMPDM DGFKLLELVG LEMDLPVIML SVNDDPKMVM KGITHGACDY LLKPVRIEEL 120 QNIWQHVIRR KKIDSKERNK TSDHDKPNAD NGNGRVSAGT GNSDQNGKPS KKRKDQDEDD 180 EEENEDGHDN EDSSTLKKPR VVWSVELHRK FVSAVNQLGI DKAVPKKILD LMNVEKLTRE 240 NVASHLQKYR LYLKRISCVA NRQANLVAAL GTADSSYLRM GSLSGVGHMQ TLTGPQQFHN 300 NAFRPFPPGG MIGRLNASVG LNMHGISSSE ALQLSHAQNL NKSINDPLKF QSAIACGNQN 360 GIQGMPMSIG LDQLQHNKGV SVGPIQNMSS LIDDRPTFGV SKKLSDQTQK VTIGCSPSPV 420 LDISNNDLVL KADSENTQGG GVYENLTSVA SQHSQFSLPL LDHGRCSDIW SSPMQSSGTN 480 SYPPSETLQG GNLSGQSSIT SLFNQSHDSP TDMHSQGLIF TNNLGQMSNN VPFQGWDDNN 540 HDSNYDANVI GNSIDTLIDP EGHTSINSNY NRNLDFNFCN PLQMKHDGIM GLSEENSLKQ 600 QYGYIMNRQK SQNSSATNNL GSLEDFASSM MKQKQDKVKF LDGSYLCNNN YPAGTSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-25 | 197 | 257 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42494.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236221 | 0.0 | AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622044.1 | 0.0 | two-component response regulator ARR12 | ||||
Refseq | XP_028199202.1 | 0.0 | two-component response regulator ARR12-like | ||||
Swissprot | Q6K8X6 | 1e-140 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | A0A0B2SDX4 | 0.0 | A0A0B2SDX4_GLYSO; Two-component response regulator | ||||
STRING | GLYMA14G13320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-135 | response regulator 12 |
Publications ? help Back to Top | |||
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