PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 332aa MW: 37167.2 Da PI: 7.4482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5e-05 | 156 | 175 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ KHN42481.1 156 FSCTVCNKMFNRFNNMQMHM 175 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 241 | 263 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ KHN42481.1 241 FGCRKCGKPFAVRGDWRTHEKNC 263 56*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.88E-5 | 152 | 177 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 156 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.53E-5 | 224 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.8E-5 | 227 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQAHHPFSYI SSCPGSSTSA FLEPHHHHHH EVVDEASISL SLGPPGQQQH KNHYQATTSS 60 SSHHPSSILH HHYQQNPSTT TATTSDDHHH QRGGVTVALH IGLPSPTTTT SSTNSATTPT 120 TTSKLPDLHL ASAAPNIQGQ YWIPSPAQIL IGPTQFSCTV CNKMFNRFNN MQMHMWGHGS 180 QYRKGPESLR GAKPASSMLR LPCYCCAEGC KNNIEHPRSR PLKDFRTLQT HYKRKHGAKP 240 FGCRKCGKPF AVRGDWRTHE KNCGRLWFCI CGSDFKHKRS LKDHVRAFGD GHAPHTVESC 300 DRVGEDEDDE ELEVEDEEEE DYHSNDLVFG FN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42481.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-44 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573265.1 | 0.0 | zinc finger protein WIP6 | ||||
Refseq | XP_028234121.1 | 0.0 | zinc finger protein WIP6-like | ||||
Swissprot | Q9FX68 | 1e-117 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | A0A0B2S708 | 0.0 | A0A0B2S708_GLYSO; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | K7K2R1 | 0.0 | K7K2R1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G22120.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-112 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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