PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN42330.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 752aa MW: 86730.6 Da PI: 8.2004

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN42330.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.5e-22	1	79	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel+p KHN42330.1 1 MGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELVP 79 7*****************************999888...7788889******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-20	1	79	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-30	199	292	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.285	479	515	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-7	481	514	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	490	517	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MGFTTSIKNS RRSKKTKEFI DAKFACSRYG VTPESDSGSS RRPSVKKTDC KACMHVKRKP 60 DGKWIIHEFI KEHNHELVPA LAYHFRIHRN MKLAEKNNID ILHAVSERTR KMYVEMSRQS 120 SSCQNIGSFL GDINYQFDRG QYLALDEGDA QVMLEYFKHV QKESPNFFYS IDLNEEQRLR 180 NLFWIDAKSI NDYLSFNDVV SFDTTYIKSN DKLPFAPFVG VNHHSQPILL GCALLADETK 240 PTFVWLMKTW LRAMGGQAPK VIITDQDKAL KTAIEEVFPN VRHCFSLWHI LESIPENLSF 300 VIKKHQNFLP KFNKCIFKSW TDEQFDMRWW KMVSICELQD DLWFQSLYED RKKWVPTYMG 360 DAFLAGMSTP QRSESMNFFF DKYIHKKITL KEFVKQYGII LQNRYDEEAI ADFDTLHKQP 420 ALKSPSPWEK QMSTVYTHAI FKKFQVEVLG VAGCQSRIEA GDGTIAKFIV QDYEKDEEFL 480 VTWNELSSEV SCFCRLFEYK GFLCRHALSV LQRCGCSCVP SHYILKRWTK DAKIKELMAD 540 RTRRTQTRVQ RYNDLCKRAI DLSEKGSLSE ESYNVVFRTL VDALKNCVLV NNSNNNGAET 600 SSNAYGLREA EENQVPLALK PNKKRNAARK RKGQLEQDVI LVDAQDSLQQ MDNLSTDAIT 660 LNGYYGTQQN VQGLVQLNLM EPPQDGYYVN QHSMQGLGPL NSMGPSHDGF FGTQQGIHGL 720 GGQLEFRRAA TFGYSLQDEP DPQFHGNSSR NT

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MGFTTSIKNS RRSKKTKEFI DAKFACSRYG VTPESDSGSS RRPSVKKTDC KACMHVKRKP  60
DGKWIIHEFI KEHNHELVPA LAYHFRIHRN MKLAEKNNID ILHAVSERTR KMYVEMSRQS  120
SSCQNIGSFL GDINYQFDRG QYLALDEGDA QVMLEYFKHV QKESPNFFYS IDLNEEQRLR  180
NLFWIDAKSI NDYLSFNDVV SFDTTYIKSN DKLPFAPFVG VNHHSQPILL GCALLADETK  240
PTFVWLMKTW LRAMGGQAPK VIITDQDKAL KTAIEEVFPN VRHCFSLWHI LESIPENLSF  300
VIKKHQNFLP KFNKCIFKSW TDEQFDMRWW KMVSICELQD DLWFQSLYED RKKWVPTYMG  360
DAFLAGMSTP QRSESMNFFF DKYIHKKITL KEFVKQYGII LQNRYDEEAI ADFDTLHKQP  420
ALKSPSPWEK QMSTVYTHAI FKKFQVEVLG VAGCQSRIEA GDGTIAKFIV QDYEKDEEFL  480
VTWNELSSEV SCFCRLFEYK GFLCRHALSV LQRCGCSCVP SHYILKRWTK DAKIKELMAD  540
RTRRTQTRVQ RYNDLCKRAI DLSEKGSLSE ESYNVVFRTL VDALKNCVLV NNSNNNGAET  600
SSNAYGLREA EENQVPLALK PNKKRNAARK RKGQLEQDVI LVDAQDSLQQ MDNLSTDAIT  660
LNGYYGTQQN VQGLVQLNLM EPPQDGYYVN QHSMQGLGPL NSMGPSHDGF FGTQQGIHGL  720
GGQLEFRRAA TFGYSLQDEP DPQFHGNSSR NT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN42330.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	0.0	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028222674.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	I1NG11	0.0	I1NG11_SOYBN; Uncharacterized protein
STRING	GLYMA20G26810.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]