PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN42315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39842 Da PI: 4.7015 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.2e-10 | 280 | 320 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq KHN42315.1 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-14 | 273 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-12 | 275 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.13E-12 | 279 | 324 | No hit | No description |
Pfam | PF00010 | 1.1E-7 | 280 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MEPVQLVSEE WGSLCGFHTT EEADFMVQLF GGNTSVTEKH SGNTTFGFWP GHESTIVAMT 60 DTNSNSYLPP NFTDTNFLCF SQGSSSSTDN SGNNIFSTTS SGTYSCDPET NFDSVPMVLC 120 LGDAKFSPHS FQCDDYLSQQ INENTDEESS LDPWKLAIAD NNLQAKREYE MMVSEPVEED 180 RSRNLENLPK RLKSSIEVPK TSRNAKSRKN SKSASTSNDE DDRSLSLQVQ RNNSCFSQSD 240 SNAYLEPNGG ASKDPAPPNL HRKSRATTSA ATDPQSLYAR KRRERINERL RILQNLVPNG 300 TKVDISTMLE EAVQYVKFLQ LQIKLLSSED LWMYAPIVYN GINIGLDLGI SPTKGRSM |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN42315.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028219740.1 | 0.0 | transcription factor bHLH84-like | ||||
TrEMBL | A0A445F4H9 | 0.0 | A0A445F4H9_GLYSO; Transcription factor bHLH85 | ||||
STRING | GLYMA20G26980.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-39 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|