PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN42183.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 44737.4 Da PI: 5.6522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 130 | 175 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ KHN42183.1 130 RGHWRPAEDEKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 175 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 182 | 225 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ KHN42183.1 182 RRSFSEEEEERLLTAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 225 6789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.309 | 125 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-15 | 129 | 178 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 130 | 175 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.21E-28 | 130 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 131 | 183 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-14 | 133 | 174 | No hit | No description |
PROSITE profile | PS51294 | 26.608 | 177 | 231 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-15 | 181 | 229 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 182 | 224 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 184 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-7 | 193 | 224 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MSSSQHLNNV GEDSSSRDMS FFPPSSLYVG SSQTQTPPLS LSHGNGVEGS NSNPEMGLLI 60 FASTVFQQPQ ECRGTKRAID EEEEEEEEDE EEEEGVDEIE NNKNLCLKLG GDEAQAAKSS 120 ASGKTKLCAR GHWRPAEDEK LKELVAQYGP QNWNLIAENL EGRSGKSCRL RWFNQLDPRI 180 NRRSFSEEEE ERLLTAHRMY GNKWAMIARL FPGRTDNAVK NHWHVIMARR QREHSSRVYR 240 RRKLVVNETV LPKGLNLTLS NNNAGSESTI SSTIDESAST CTNLSLTPPS SAKVTPPFGR 300 LFDHHGPSQN HHQAFGSLIG QAIGDVSFNK KFCGASWNGV AYKKAEQVGK LKGVDQSNFS 360 DANSEVSVSE SVATNRSNVS ISEESETVGD KINMPFIDFL GVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 130 | 230 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN42183.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031183 | 0.0 | KT031183.1 Glycine max clone HN_CCL_37 MYB/HD-like transcription factor (Glyma03g00980.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028223995.1 | 0.0 | transcription factor MYB54-like | ||||
Swissprot | Q5NBM8 | 9e-73 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A445L5M8 | 0.0 | A0A445L5M8_GLYSO; Transcription factor CSA | ||||
STRING | GLYMA03G00980.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 1e-66 | myb domain protein 117 |