PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42100.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 446aa    MW: 48940.7 Da    PI: 6.7118
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42100.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.4e-14188238155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  KHN42100.1 188 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 238
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-13104159IPR001471AP2/ERF domain
PROSITE profilePS5103210.876109153IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-9117154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-11118153IPR001471AP2/ERF domain
PfamPF008471.1E-9188238IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-17188248IPR016177DNA-binding domain
CDDcd000181.01E-25188248No hitNo description
Gene3DG3DSA:3.30.730.101.9E-16189246IPR001471AP2/ERF domain
SMARTSM003801.4E-31189252IPR001471AP2/ERF domain
PROSITE profilePS5103215.461189246IPR001471AP2/ERF domain
PRINTSPR003673.8E-6190201IPR001471AP2/ERF domain
PRINTSPR003673.8E-6228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MWNLNDSPDQ RKDYESEGCS SSLNDDKGKR VGSASNSSSS AVVVEDGSEE EDSERGGSRT  60
LDKKTNKIFG FAVAHDDSDH PPVTHQFFPV EDSELPVSAP PPPPRPEAPS HVLTGDCGKQ  120
VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFNIEDYEED LKQMTNLTKE EFVHVLRRQS  180
TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKE  240
AVTNFDPSIY DSELNSESSG GVAADHNLDL SLGNSSSKHN NSQTSGNHFA NSATDQHMPP  300
ESNWRNGGSK PKLVNILPKP CGRSNIEAYG HGESETLRLL SQTHLQSPTN KEMHRYGPYR  360
SPAEPQKPHN FAHHLHQPSF HVPSSSSNGG RIGSDLSLSM SDQQQWQAGP PHLLATAAAS  420
SGFPQQIRPS QGWLQKNGFH SLMRPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619325.10.0LOW QUALITY PROTEIN: floral homeotic protein APETALA 2-like
RefseqXP_028190292.10.0floral homeotic protein APETALA 2-like isoform X2
TrEMBLA0A445HXC80.0A0A445HXC8_GLYSO; Floral homeotic protein APETALA 2 isoform A
STRINGGLYMA11G05720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-94AP2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]